RNA id: TU77373


Basic Information

Item Value
RNA id TU77373
length 891
RNA type TUCP
GC content 0.58
exon number 3
gene id AMCG00020230
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13595518 ~ 13596917 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTtctcttccctcccctccctccaaGACTGCAAAACTTTATTGCACTCTTTCTCTCCAATCTCAAAACAGCTACACCGTTTCTGCCCCCCATACATTGGCAGGGACGCTTCCCAGCATCCCGCTCTCCGATTGGCCCACTGCGCCTAGCCTCCACCAATCGGAGTCGTTTTTAGTCAAGGTCGAATCACTTCCTCCTACTGCGGGTGAGGATAGCTGTGATCAAGAATAactccatctctctcacacGTTGCTGTCTGCTGCCACTGCTTCCTCCAAGGACTCAGCCTCTTGTCCCCCTGGCTGCATCGCACTCTACTGTGTTAAACCATCCCAGTGTGCTGCCCCTGGccctgctgttgttgctgtgtgtcTTTCTTGTTGCTGTGGGAGGCAGAGATGGGGGTGCTGTCAGGCCTGGCGCAGGGCCTGGTGCGGGGGGCGGACCGCATGGCCCAGTTCACCAGCAAGCGAGGCCCGCGGACCTTCTACAAGGGCCGGGGTGCGCGCAGGACAGGCGTGCTGACCAGCAGCGGCTCTGagccccccctcacccccaagGCGCTGTTCACCCAGACCGTGGCTCCTGCCGTGGAGCGCGACCTGCGCGAGGGCCGCTTCCACCCCCAGGAGCTGGAGCGCTATGGGTTCGAGCCCTCACAGGATGGCAAGCTGTTCAAGCTGTACCCCAAGAACTACGTTCGCTAGAGAGAATTGGGAGGGGAGAAAGACCATTGCCATGCACTGTGATACAGAGACTGAACTGGAGACTTTGTGCAGGACTGTACCCCAGGGACTACAGACCCCAGCACTGTAGTCACTGCACTTGACATCTATAAGGGACCCCCCATtcattaaacaaactaaaataaaactgcaaagaaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77271 lncRNA downstream 145456 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 257417 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 587852 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 790085 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 852081 12719367 ~ 12743437 (-) True G61550
TU77451 lncRNA upstream 154167 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 192474 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 215054 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 215054 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 224831 13821748 ~ 13823540 (-) True G61927
AMCG00020224 mRNA downstream 6590 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020220 mRNA downstream 124662 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020219 mRNA downstream 168107 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020221 mRNA downstream 192278 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020216 mRNA downstream 207521 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020231 mRNA upstream 53672 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020229 mRNA upstream 67159 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020237 mRNA upstream 75378 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020236 mRNA upstream 94010 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020235 mRNA upstream 111899 13708816 ~ 13710669 (-) True AMCG00020235
TU77151 other downstream 371008 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 597295 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1085581 12500424 ~ 12509937 (-) False AMCG00020180
TU76916 other downstream 1098778 12490698 ~ 12496740 (-) False AMCG00020180
TU77394 other upstream 67170 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 208103 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 208103 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 532761 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 733605 14330522 ~ 14332407 (-) True G62061

Expression Profile