RNA id: AMCG00020231


Basic Information

Item Value
RNA id AMCG00020231
length 2988
RNA type mRNA
GC content 0.60
exon number 24
gene id AMCG00020231
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13650589 ~ 13663220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTCTGGTCTGTGCAgcttcctcctgctgctgctactgtgtGTCCAGAGCTGGGGCTATGGTCAGAATTTCCTGTGCGACTTTGAGAGGTCATTGTGTGGCTGGAGTGACCGGTCCGGCCCGTCCACGGCCTGGGAGAGGAGACAGAGGCACGAGACCCTGCCGGACAACGCCCCCTTCTCTGACTACACACTGGGCACTGATGCAGgcTGGTTTGTGGCAGTCCAGTCTTCTAGTTCTGAGCACAGCAGTGTCGCCCTCCTGGAGTCCCCAGTAATGTCAGAGGCTGCTGCCAGCTGTGAGGTTCGACTGCGTTACTTCATGTGGGACTCAGGTGTGTCTGAGGGTATGTTGGGGACAGCACTATGGGCGAGTGTGTGGCGGTTGGCAGAGGGGGCGGGGGGACTGGTGTGGCGCCCAGGCGTGTCCAGCGTGCGTGGCTGGAGGGATGCGTCTTTCTTCCCCGGCCGTCTCCCCAGGGGGTTCATCCTGCGCCTGCACTCCCAGCATGGCCCCCACGAGCCTGGTGCCGTCGCCATTGATCAGCTGGAGTTCAGGAACTGTGCCCTACCAGtgccagATCAGGGTCCATGCACTGAGGGGGAGGTTCGGTGTGCCAGGGGGGGCTGTGTGAGTAGCGAGAAGCTGTGCGATGGCACAGACGACTGCGGGGACAACAGCGATGAGAGAGGGGAGCTCtgtgGAGAGTACAGAAAGTGTGACTTTGAGCATGGCACCTGTGAGTGGCAACAGATGAAGATGGCCAGCCTGAAATGGAAGCTCACCAATCAGATGTCCCTGCATGCAACCTTTGACCCCATGACCGGGCCAGGCAGAGATCACACCACCAACACTGACCAGGGGAACTTCCTGTACATCAGCACTGCAGCCAGCAATGAATCCGATTGGACGTCTCTGGAGAGCCCAGTCCTGGAGCCCACCAATGACACGAACCCTTGCGGGTTGGTGCTGTACTATCACCTGTTTGGTCCACGGGTGGGGGGGCTGTCTGTCATAGTGATGACTGCAGAGAAGCTGTATCCTGTGCTGGAGAAGGGGGGCGAGTATGGCGACCTCTGGGTCAAAGGTCAGGTGGACCTTGTCGTCAACACCACCTTCCAGaTCATAGTGATGGCCTCACTGAGGGAGGGGCAGTACGGGGGGGTGGCAGTGGATGACCTAATTCTGTCTCCGGGCTGCCGCAACTCTCAGGAGCCCCCCCCACCATTACCGCCCGTCAAGCCCCCCCATCACAGCTGCGGAGAGGGCCAGTTCCAGTGCGCCAGCAGCGAGTGTGTGGCACACACACTGGTGTGTGATTTTAAGGAGCACTGTCGAGACGGCTCGGACGAGGCGCAGTGCGGTTACCTGATGGTGTTACCGGCCCCAGGCCAGGTGTCCACTGCCGCCCGGGCTCTCACCCCCGTGCTTGGCCCCTCTGGCCCCTTCTGCTCCCTGCGCCTCTCCTACGGCACTTTGGGAAACACCACACGGCCAGGCATGTTGTCGCTGAATGTGGTAGAACAGGACCGCGGCACGCGCTCGGAGGTGTGGCGCTACCAGGGAAACACGGGGGGGCAGTGGCTTAGCGCCATGGTAACCATCGGAGCCAGAGAGCGGGGCTTCCAGgtggaggtcagaggtcatgtGCCTGACTTCCTGGCTGAAACTCACTTGATAGCAATTAATAAGTTTGAGTTCCTGACCTGTAACATATCTGAGCCAGACAATTCCAGAGAGCTGACCTGTAATTTCGAGGCTGGTCTGTGTGGGTGGTACCAGGACCAGACTGACAGCTTCGACTGGTTCCTTGAAAACGGGTCTGACCATACCATCGGTCCAGGAGTGAGTGTGTCCGTGCCCCTGTGGTCCCCCTCCCTGCGGGGGCTGACTGGCAGGCTGCTCTCCTACCCCCAGCCTACCCCCAGCACCTCCCTGTGCCTCTCCTTCTGGTACCAACTGTACGGGCCACAGActgGATCTCTCAATGTGAAGTTACGTTCTGTGAATGATGGCCAAGAGCTGCTCCTTTGGACCCGCAGCGGCTCCCACGGAAACACCTGGCACCATGGCAACTGCCTCCtcacccccatccccccaaaCTTCCAGCTGGTGTTTGAGGCAGTGCGTGATGGTTTTGATGGCCATGTTGCTGTGGATGACGTGATGGTGACAGAGTCCTGCCCGACCCAGACCAGCTGCTCCTTCGAGGGTTGGGACTGCGGCTTCTCCTCCTCTGGCTACGAGCGTTGGGTCAGACAGAACTGGGCCACCGGGGAAGTGACGCCCGGCCCCCcaagtgaccacagcctgggcACTGACCGCGggtacTATATGATAGCTGACACCAGTCTGCCCAGCGGCAGTgaggtggggggggggcgtgtCCAGGTGTTTGCAGACAACGTCTCCCAGGGTAATGCCTGGCGTCACGGCAATGTCAACATCAGCACCACCAGAGATTGGCAGCTGGTGTTTGAAGcggagggggcggggggagtCCAAGCATACATCGCCCTTGATGACATCACCTACATCCCCCATACCTGCCCTGGACCAGGTCACTTCCTGTTCCTGCCGAGTTCTCAGCGGGCGACGGCTGGTCAAACTGCTTGGCTGCTCAGCCCCCACTTTCCCCCGACGACCGGAACCTGCCTGAGCTTCTGGGTACACAGAGCTGTCCACGACAGTACCCGCAGTGACAATACTGCAGAGATAGTGGTGTCAGTCCTGGTGTTGCTGGTGCTCCTGGCAACGCTGGCTGCCCTGCTGGTGTTTTACTTCCGTCTGCGCGGGCGAGGGCCGCTGAGCAGCACCGAGAGCTTCGGCGGGTTCGACAACACCACCTACAACACCAGCGACACGGAAAGGGTAGTGATCCCCCGGTTGCAGATGGCCCAGGACGACCCTCAGGACAGCATTGAGAACACCACCTACTCTACCAGCGACcaggaccgGCAGGCAGTGTGGATGGTGGAGTCGTGA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77271 lncRNA downstream 200527 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 312488 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 642923 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 845156 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 907152 12719367 ~ 12743437 (-) True G61550
TU77451 lncRNA upstream 87864 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 126171 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 148751 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 148751 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 158528 13821748 ~ 13823540 (-) True G61927
AMCG00020230 mRNA downstream 54482 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020224 mRNA downstream 61661 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020220 mRNA downstream 179733 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020219 mRNA downstream 223178 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020221 mRNA downstream 247349 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020229 mRNA upstream 856 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020237 mRNA upstream 9075 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020236 mRNA upstream 27707 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020235 mRNA upstream 45596 13708816 ~ 13710669 (-) True AMCG00020235
AMCG00020240 mRNA upstream 48562 13711782 ~ 13715191 (-) True AMCG00020240
TU77373 other downstream 53672 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 426079 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 652366 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1140652 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 1153849 12490698 ~ 12496740 (-) False AMCG00020180
TU77394 other upstream 867 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 141800 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 141800 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 466458 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 667302 14330522 ~ 14332407 (-) True G62061

Expression Profile