RNA id: AMCG00020232


Basic Information

Item Value
RNA id AMCG00020232
length 1968
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00020232
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13732640 ~ 13736452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTAACCCAGCCTCCTCCGCACACACACCTGTCCCGGCGGTTCCCGGTTTCTTTCCGAATAACTGATCGAACTAACCGACATCGCCAGCCTCTCCTCTCCCGCAGCGACATGAGCGCCCAGGCGACAGACAGCGAGCTGACCCCCGTGTCTTTGCAGGACGGGGACGGGGAGCCTCGGCTCAACTCTGCTGGTCTCCCAAGCACAACCTCCCTCCCCCGCGGCCAGGACGGCAACGCCGGCACCCAGGACCCAGATCCTTCAGAGGAGTCGCGGCTGAAGCCCTCTGGAGGCAGGGAGCACAGcggcgaggcaggagaggaagcCGGCCCGGGCGAGGCGGTGGGGCAGTGTGTGGACCACGAGTCGGAGCTGAACTGGTTCTGCATCACGGAAGGGAAACGCGTCTGCTCCCAGTGCCCCATCGTGGGCTCCTGCAGGGGACACAGCGTCAGTCCGGTGGAGCGCAGAGCGGCCGCGGTCCGAgaTCGGCTGGTGGACGTCTGTGagaagctgcagctgcaggccCAGCGCATCGAGCGTTTCCTGAGCGACACGCTGTCCACCCGCGAGCACGGCCTGCAGGTGGCAGCGAGCAGTGCGCGGGAGCAGTGTGTGCGGTGGGGAGCAGGGGTGCGGGGGGCAGTGGAGGAGGCGGAGCAGTGGGTGCTGGAGGCGGTGCAGAGGGAGGACGAGCGTGTGCGGAACAGCCTGCTCACCCAGCGCGCCCACTGGGCACAGGGCCTGGGCAGGCTGGGCACGCTGCGGGCCGAGCTGGTGCGGCTGCTCACTGAAACCACAGACTCACAGCTGGTGAGCTCCAGCCAAGAGATGTCAGAGAGggtggaGCAGgcggagggggtgggggagccCCATGACTCGGACaagctgacctttgacctcagGTGCTGTGAGAGCCCCCTGTTGATGAGCATGTGGGTCAGTGCCACCATCCTGAGTCACCctgCGGAGAACTCCCTGTGCTTTGATGAGGGGACGGTCAGCCCACTGCTGTCCCTGTCTGACGATGGCCGCTGCCTGACCTTCCTGCCCCGTCGGCAGCGGCAGCCCCGCCTCTACAACCCTGGTCGCTTCGACAGCTGGCCCAATGCGCTGTGCGGCCGCGCCCTGGCCTCTGGGCTGCACCGCTGGACCCTATCGCTGGAGGGCAGCCAGGCCTTCAAGGTGGGGGTGTGCTACGGCAGCATGGAGCGGAAGGGCTCCGGGAACGCAGCACGCCTCGGCTACAACACTGGGTCCTGGGTCCTGTCCTACTACGAGAGCAAGTTCTGCTTCTCCCACGCGGGCCGGCACCTCGCCCTGCCCGTGCTGTGCCGGCCCAAGTGgctggctgtgctgctggactTCCAGGGGGGGACGCTTGTGTTCGCGGACAGAGAGAGTGGGGCTGTGCTGCACGCCCACCACCAGGCCTTCAGCGAGGCCCTGTACCCCGCCTGTGCCGTCGCACACCAATCCCTCCATCTCCTCAGCcactgagggagagggggacTGCAAAACTGGAAAACACTGTTTGATACTTTCCCTCACTCTCACTGTATTGtcaccgtctctctctcccactgtgTCATTCTCActgtcactctctcactctattGTCACTCCCattcactcacactctctctctctgctctgagGATTTTGAGGCAGGTGTTTTACAGCCTCCTCTAGATTTCTGAGGTTACTGAGTGactgtgacatcactgacaGGGCCCTTCCATGAACAGAATGCTGGGACTCTCTGATCACAACACCcccgtctgtgtgtctgtaaataTATGATATTGTATACGTACTGTGTCAATTAAATACTGAACAATCATAAAATGTCACTGTTGTGTAGAGCAGTCGGTACCCAGTGTGTCCTACAGAGGGAGACATTACACTATCgcaaagacagaaagaaaaaaagagacacacagagatgagCTCCTGAATAAATTCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77411 lncRNA upstream 23144 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 135914 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 381106 13351248 ~ 13351534 (+) True G61676
TU77199 lncRNA upstream 383494 13348855 ~ 13349146 (+) True G61674
TU77197 lncRNA upstream 388601 13343757 ~ 13344039 (+) True G61672
TU77450 lncRNA downstream 14635 13751087 ~ 13751363 (+) True G61871
TU77473 lncRNA downstream 53310 13789762 ~ 13792944 (+) True AMCG00020245
TU77505 lncRNA downstream 140859 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 146373 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 151699 13888151 ~ 13890428 (+) True G61895
AMCG00020227 mRNA upstream 92712 13625863 ~ 13639928 (+) True AMCG00020227
AMCG00020228 mRNA upstream 119262 13597969 ~ 13613378 (+) True AMCG00020228
AMCG00020226 mRNA upstream 137189 13592096 ~ 13595451 (+) True AMCG00020226
AMCG00020222 mRNA upstream 146690 13583281 ~ 13585950 (+) True AMCG00020222
AMCG00020223 mRNA upstream 153465 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020247 mRNA downstream 18483 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020245 mRNA downstream 50562 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020242 mRNA downstream 85309 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020243 mRNA downstream 103101 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020255 mRNA downstream 127564 13864016 ~ 13872645 (+) False AMCG00020255
TU77200 other upstream 381928 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1112823 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1194888 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 1194888 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3944588 9784117 ~ 9788052 (+) True AMCG00020105
TU77491 other downstream 96718 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 127025 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 211974 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 731348 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 3077922 16814374 ~ 16815857 (+) True G62632

Expression Profile