RNA id: AMCG00020233


Basic Information

Item Value
RNA id AMCG00020233
length 2795
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00020233
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13723015 ~ 13730484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCACTTACGTCACTGCCCTGGAATTAAACGTAAAAAAAGATTCCCAGCGCTCGCCTCCTGATTGGCTAGACGGCCCTCCCTGCTCTGCGCTGAATGGCCCAGGCGACGGCGCTCTCGGCCCGgagcccctccccctccccggCCTGCCTTTCCGTCGCCGTTGCGGGAGTGCGAGTGCTGAGAGGCGGCTTGTGCTCGACCGGATCCGGAGCGGGCCGGGGCGGCGGGGTCGCCCTGACGAGAAACATTCTGCGCCGCAGTCTCGCCTCCTTCCTCATCGCTGCTCGGAGCCACAGCGGACGCGACAGCCCCTCTCTGtcctcccccgccccccaatGTCGGACTTCAAGCTCGGGATAGTGCGGCTGGGCCGTGTGGCGGGGAAGACGAAGTACACACTGATTGATGAGCAGGACATCCCGCTCGTGGAGAACTACGCCTTTGAGGCGAGGATGGAGGTGGACGCTGATGGCAATGGGGCTCAGATCTTCGCCTATGCCTTCGACATCAACAAGGGCCGCTGGGCTGGGCGCCCGCTGCACGAGCTGCTGTGGGAACAGTCTCTGTACTGGCTGGCAATCCAGCAGGTGCCGGCTGACCCCGGGGAGGAGCAACCGTTGGAGCTGAGCCGCACGCGCTACTACAATGCCAACGGGGAGCTGGTGCAGGAGGAGGAGTGCTCCTGCACTTACTACGAGTGCCACTACCCCCCCTGCTCGCTCATTGAGAGACGGcTAAGAGAGTTCAACATCTGCGGGCGCTGCCAGGTGGCGAGGTACTGTGGCTCTCAGTGCCAACAGAGGGACTGGCCGGCCCACAAGAAGCAGTGCCGGGAGAGGAAGCGGGCCCTGGCGCTGGAGTCCGAGCCCGAGCGGTGATCCCTCTGACCTGGGGCCGGGCGGGGGCGTGGGGCTGAAGAGAGAGATGGGCAAGGAGTGCGAGAGAGGGAGGACGAAAGGCGCGCAATTGCTCACTGAACTGCTCTGCTCTACTGGGTCTGAGTCGACGTGCACCGCCCCCTGCTCCCCCCCACCTGGAAAGGGACACAAAGCTCACTACCATGGAAACGGACCCTCTCACTGTAACTTCCCCCCTCCCTTGGTGGACAACTGGACAGcttgcacccccccccccaccccttgcACTGCTACTGAGAGGAGAGTGAAGAGAGGGGAGGGGCAGGGTGGGCCGGAGCCCTGAAGTGTTCCTGTCCTCACTGGGGCTCCTGGCTGCCCACCTGCCTGACCAGCCTGCCCCACCCCCGGCCGCTCCGGACATTGTTGGTTCTCACTGATGCTCTgcagtgggtggggggggtgtttttgtgtgtttaaatgtctgTGGATCTGAGAGCAGTGGCGGCAGACCATGATTTCCATTACTTGTTATtcgtggtaaaaaaaaaaaaaaaaggaaaagtcagATAATCCTGTGTGTGGATTaaactcccccaccccctcctccacaTAGATGTTACACAGACCCACACAATGcgacacagacatgcacacacagtgacacactgggtgagagagagagacacaatcTAGATAGAACACTCGATAACTGACACAACAACGCCACCCACAGCACGGCCTGTACAAGGTACAACACATGCTTACAGAAAACCACATTACCGCCCTCAATGTCACATGCTTGCTAGCGCACACACGGCCACACGCAGACCCACAGAAACTGACGCACAATGGCCTGCTGTCCTGCACTGTCCACACAGCGGTACAGATTCCAGTCAGGGTGCCCGCCTGCCCTTTCCAGGACTGACTGGGGAGAGCTCTGTGGGGGCTGGGGGCAGGCTGGCCCCGGGTACGACTGGTccgtctgtatgtgtgtccAACAGAACAGGGcagtctgcctgtctgcctaTCTATCCTcagcattgttgtttttattgatattgttcTTGTTGTAGTTGCTAATCTGGACGGGTTTAAACACTGCACTGAATCGGTGTCCTCACCCTCCCTCGTATTTTATCTTCCTCTTTTCtccttcctttttatttatttctcatttttgcttccctctctcctttctttaTCCTGTCAGGGGAAGCAAAATGAGAGCGATGGACTGCACCTCCTCTGAGTGAGCGAGGGTGGAATTGAGGGAGGAAGGGTAGAGGAGGGGAGGGCAGGGCAGGGGTGAGAGGGGgtgcttctgtttgtttttatttaggcAAAAACACAATCCTGATTAATTCTCGAAAAAAAGGCTGATGAATgaagggctgtgtgtgtgttcagcgCCTTCCACTGTACAAATACactaaaagttaaataaaaatgaataaattaaaaaattatatctGGAGAGCTGTGCTCCTGTAAGGGGGTTGGAGGGGAGAGATGTGGGGATGAGGGAAAAATCACAATGActctaaataatgtatttaataactGAATTCATTTGGCGCGTAATTCCTTCTGgcctttattttttctgctgccTACAGTTTGTGTTCATCCTACTGTAGTTCATGATTTGCAGAAGCCGAAGATGTTGTGTCAGGGCACCACCACTTGGCGGCGACATTGCACATGGAAAGAAGTCCAATCCGTTAACCATTATTTAATGTGGTTTAGTAAGTATGGCTTTTGCTCGGTTAAACTCCGCCGTTTCCCCGGAGTGTGTCGTGTGTGGTGGCGTGCTACCCATTTTGCTATGAATATAAtgaagttaatttgaaattaaagttgGCAAGTCAAAACTTTTTCAGTGGACAGGAGAAAAAGGTTTTCAGAAAACAGTCCCGGGTCTCTGTTATGACTGT

Function

GO: NA

KEGG:

id description
K24632 ZMYND19; zinc finger MYND domain-containing protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77364 lncRNA downstream 69636 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 272953 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 384914 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 715349 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 917582 12804670 ~ 12805433 (-) True G61558
TU77451 lncRNA upstream 20600 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 58907 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 81487 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 81487 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 91264 13821748 ~ 13823540 (-) True G61927
AMCG00020238 mRNA downstream 67 13719430 ~ 13722948 (-) True AMCG00020238
AMCG00020240 mRNA downstream 7824 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020235 mRNA downstream 12346 13708816 ~ 13710669 (-) True AMCG00020235
AMCG00020236 mRNA downstream 20825 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020237 mRNA downstream 38609 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020239 mRNA upstream 7250 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020234 mRNA upstream 29930 13760414 ~ 13767183 (-) True AMCG00020234
AMCG00020253 mRNA upstream 62713 13793197 ~ 13797273 (-) True AMCG00020253
AMCG00020248 mRNA upstream 70109 13800593 ~ 13804321 (-) True AMCG00020248
AMCG00020252 mRNA upstream 76271 13806755 ~ 13808306 (-) False AMCG00020252
TU77394 other downstream 57430 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 126098 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 498505 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 724792 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1213078 12500424 ~ 12509937 (-) False AMCG00020180
TU77536 other upstream 74536 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 74536 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 399194 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 600038 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2368416 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile