RNA id: AMCG00020235


Basic Information

Item Value
RNA id AMCG00020235
length 968
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00020235
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13708816 ~ 13710669 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCCGGTTCGCAGCTGCAGGAGTGACAGCGACAGAGAAAGTTTCAGAGCCCGTGATTAGTGTCCGACACGATGGTCAATATCGGGCTGTCGAGAGTGGACGATGCGCTGGCAGTGAAACACCCGAGAGCTCTGCACAGGCGCCTGCCCTTCCCACCGCACTGGAACCTGCTGCTGTCTGTagtggtgGGGTCTGTGTGCAGTTACACAGTGACACGCTGGGAGACGCAGCGCTGCTCTGACCTCTGGCTGTACCTGGAGACTGGCCAGCTGGCAGAGGGCAGggGAGAGGAGCCCCTCCCAGCCGCCCCCTCTGTGGAAGCTGGGCCGAAGACCACGCGCTATGGCGATGCGATGGATTAACAATACTCTCTATACTCCCTTAGGCCCTTGCTGGCCCAATGATTGCAGATCCTGTGTAACTAATGTGGTGTGCAGGGATGGGAGGCTGGGGCTCTGCCACAGTGACAGAGTGGAGAGactacagaaagagagagagagacactgcagggagagagagagatatctgtatatataatgtggggtgattttattaatttaacaattgaTTATAAGAGCTAGTAGTAATAGTTTTGTTTGcatcagaattattattaattccatGGTCAATATTGAAGGGATCAATAGTGTAGTGAGGTGTGCTGTAGAACACTGGCAGAGGAGGGCTTTGTGATGTCACAGCCATAAAGTGAGGTCATCGATTCTGCATGTTTCTCTGTGCGGCTGCAATGAGCTAGCAAAGGGTAGGTGGGGGCACTGCCAATTCCTCCTTCTTGCTCCTTGCCCCTTGCCCCTTGCCCCCCCATCCACTCCATACAGCCACTTTTCCATTTTAGGCAGCTGTGGTTTTTCAGCTGAGGGGTTTACAAGTGTTTGTAATAAAGTGATCACTTTCTGTTGTAtttggttgttttgtgtgtatggaTATAAATTATTACTATACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77364 lncRNA downstream 55437 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 258754 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 370715 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 701150 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 903383 12804670 ~ 12805433 (-) True G61558
TU77451 lncRNA upstream 40415 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 78722 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 101302 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 101302 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 111079 13821748 ~ 13823540 (-) True G61927
AMCG00020236 mRNA downstream 6626 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020237 mRNA downstream 24410 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020229 mRNA downstream 43224 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020231 mRNA downstream 45596 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020230 mRNA downstream 112709 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020240 mRNA upstream 1113 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020238 mRNA upstream 8761 13719430 ~ 13722948 (-) True AMCG00020238
AMCG00020233 mRNA upstream 12346 13723015 ~ 13730484 (-) True AMCG00020233
AMCG00020239 mRNA upstream 27065 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020234 mRNA upstream 49745 13760414 ~ 13767183 (-) True AMCG00020234
TU77394 other downstream 43231 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 111899 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 484306 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 710593 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1198879 12500424 ~ 12509937 (-) False AMCG00020180
TU77536 other upstream 94351 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 94351 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 419009 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 619853 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2388231 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile