RNA id: AMCG00020237


Basic Information

Item Value
RNA id AMCG00020237
length 1986
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00020237
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13672295 ~ 13684406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCcctgccctctccctctctctctctctctctctctccctctctttatctctctctctctctctccctgtccgtCTCTCACCCGGTCGTGCCCTCATGTCTCGGCAGTCCTGTCAGGTGTTGGccccagtgctgctgctgctggtcgGCATAATTGGGATCATCCTGCTGGCAATTCCCATCAAGGACGTGGAGGAAACGCCGGATTACATGTACGGTGTGGTTCTGGATGCTGGCTCCTCGCACACCACCGTGTTCATCTACAAGTGGCCGGCGGACAAGGAGAACGGCACGGGCATCGTGACTCAGCACAAGGAGTGCCATGTGGAAgGTGGGGGGATTTCCAGCTACGCAGAGCAGCTGGGGGGGGCGGGGCGCAGTCTGGTGAAGTGTCTGGACCAGGTTGTGCAGGACATCCCAAAGAGGAGGCATGCCCAGACACCTGTGTATCTGGGTGCTACCGCGGGCATGAGGCTGTTGAAGAACCTGACCCTGGCGGAGGTGTTTGACTCGCCCTGCACCACGGACCAGCAGCCCCGCCCCTACAGGCCCCAGGAACGCGTGCTCCTGATCGGCACGGGCAGCTATGAGCGTTGCCGTGCAAACGTCTCTCGCATCTTCAGCTTCGGCAACTGCAACTTCTCACGCTGCTCCTTCGACGGGGTGTACCAGCCGCCCGTGACAGGCAACTTCATGGCGTTCTCTGCATTCTTCTACACACACAGTTTCCTGCTGCGTACCACAGAGATCTTGGTCAACTCCCCTGACCAGCTGGACCGTGCCACACGCAGGGTCTGCAACATGACCGCTGAGGAGATGGTAGTGAAGGCTCCAGACCAGAAGCGGCGACTGCAGGATtactgtgctgtgtctgtgttcatCCAGCTGCTGACACTCAATGGCTACGGCTTCAACAGCTCCACCTTCTCACACATCTCCTTCCAGAAGAAGgCGGGGGACACATCCGTCGGCTGGGCACTGGGCTACATGCTGAGTCTGAGCAGCCTGCTGCCAGGGGAGAGCCTGGGCATCCGCAAGGCACTGCGGCCGGGTGCCTGGGGGGGGCTGCTCTTTCTCCTgtcgctgctcctcctcctcgcccTCGTGCTGCTAATGCAGCACCTGTCACGCAAGAACAAGGGCGACGGCACCGTCATCTAGACACTaccatctctgtgtgtctctctgggtctctctatgtctctctgcgtctctgtcCGTTCCCTGTGTCTCATGCAGGCTTGTCTAAGGCCTGTGTCCTCCACGTTGCTCTGTCTAGAGAGGCAGGCAGGAGTGCCCAATGCCACGGTGACTGGCACAGCTGGGCTGCCCAGCAACACCCTGTCTATAGTAATGCCCAGGCCCTGCCCCCGCACCCCTTCCCTGACCACTGCAGCTTCCTCGTAGCCAGAGCAGCCTGGGCTGCAGTCAGACTGACCCTACTGACACTGGCTTCTTACATCTGACTATGAACGGGAATGTGTCGCTGTCCTGTTGTAACCACAGCAGCCACAAATCATTGTATGTCTGGCGGTCGGTGTCATGTGCGCACAGTGCGAAACTCACCTGGACTGCGGACACCCAGTGATAACCACTGCGCTCCCAACATGTGTATTCACTATTACTAatgttataatttgtattattactgctactactttGTCTATAATTACAGTtgtttgtgatatatttttcaatttcaattattaatatgtGCATGCATAAacaaagagaagaagaagactGGAACACGTCAATGCAGTTTAAATCCCCCCTGAGTCGGCTCtgtgtttacatatttgtaCTAACAGCTTcccagttaattaaaaaaaaaaaagtttggttCCAGGTGGGACCAcgtctcaggaccagggctggccATTGCAGCTCAGTACAACCCAGGGCCCCCGTGGCTCCAGGAAAAGTCCCATTTGATTGGGGaggatttctatttttatatataaataaataatgttttaagtaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77364 lncRNA downstream 18916 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 222233 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 334194 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 664629 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 866862 12804670 ~ 12805433 (-) True G61558
TU77451 lncRNA upstream 66678 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 104985 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 127565 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 127565 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 137342 13821748 ~ 13823540 (-) True G61927
AMCG00020229 mRNA downstream 6703 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020231 mRNA downstream 9075 13650589 ~ 13663220 (-) True AMCG00020231
AMCG00020230 mRNA downstream 76188 13595700 ~ 13596107 (-) False AMCG00020230
AMCG00020224 mRNA downstream 83367 13586380 ~ 13588928 (-) True AMCG00020224
AMCG00020220 mRNA downstream 201439 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020236 mRNA upstream 6521 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020235 mRNA upstream 24410 13708816 ~ 13710669 (-) True AMCG00020235
AMCG00020240 mRNA upstream 27376 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020238 mRNA upstream 35024 13719430 ~ 13722948 (-) True AMCG00020238
AMCG00020233 mRNA upstream 38609 13723015 ~ 13730484 (-) True AMCG00020233
TU77394 other downstream 6710 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 75378 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 447785 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 674072 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1162358 12500424 ~ 12509937 (-) False AMCG00020180
TU77536 other upstream 120614 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 120614 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 445272 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 646116 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2414494 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_05264265_05270065.mRNA False 780 mRNA 0.46 7 CI01000339 5264265 ~ 5270065 (-)