RNA id: AMCG00020238


Basic Information

Item Value
RNA id AMCG00020238
length 831
RNA type mRNA
GC content 0.66
exon number 4
gene id AMCG00020238
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13719430 ~ 13722948 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCATTGCCATGGAGAGAGGCCGGGCGGCTCTGGACGGCGCGGCTGGAGGTGTCATCGGCCTGTGGATTGCCCTGGCAGTTGGTGGATAAGTCAGCAGGCCAGTCTGTTGGTCAGTGTGGCGACGGGGATGCCAGGCCCTGCCCCTCAGGTCCCGGGGTGGAGAGCCAGTGTCTGGAGGTGGGGGTGGCTGTAGCCATGGAGGCGGCAAGAGAGTGCTGTAGCGAGGACGCACTGCTGGCCAGGCTGACATGCTCAGACCAAGGTCATGTGACGGGGGCGGTGGAGGAGCTGCAGATGGGGGTGCAGGAGGACAGGGCGGGGCTGGCATGTACCATACTGGACCATCCCGACAGCGAGGGCCTCATTAGTGCGCTGTGCCACCTGCTCACCTCCACGGACAGCAGGCTGTGCAGCAATGTGGCATACCTGGTGGGGGTGCTGGCAGAGAGCGAGGCGGGGGTGCGGGGGCTGCTGGCAGCGGGGGGTGCTGGTTTGCTGGGGGCACTGCAGAAGCTGCTCAGGGACCATGACCCCGAGACCGCAGCCAACAGTGCCGGAGCCATCGCCACACTgGCGGAGAGCAGTGCTGGGCGGCAGTGTGTGTTGGGCTCAGAGGTGTTCAGGGAGCTGGTCAGTGGGGTGTGTGGGCTGCTGGACCTGGTCAGTGAGGAGGCAGAGCTCAGTTACGAGGAGGGGGTCAGCAACGCGGCGCTGGTGCTGGCCAGGCTGTCGCTGTGTCCAGCTGGCTGTCAGCAGCTCCTGGCCCACCCTGAAGCCGCGCTAGCCCTGCACCAGCTGAACCGCTGCCTCACCCACGGCAGCACA

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77364 lncRNA downstream 66051 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 269368 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 381329 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 711764 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 913997 12804670 ~ 12805433 (-) True G61558
TU77451 lncRNA upstream 28136 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 66443 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 89023 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 89023 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 98800 13821748 ~ 13823540 (-) True G61927
AMCG00020240 mRNA downstream 4239 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020235 mRNA downstream 8761 13708816 ~ 13710669 (-) True AMCG00020235
AMCG00020236 mRNA downstream 17240 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020237 mRNA downstream 35024 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020229 mRNA downstream 53838 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020233 mRNA upstream 67 13723015 ~ 13730484 (-) True AMCG00020233
AMCG00020239 mRNA upstream 14786 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020234 mRNA upstream 37466 13760414 ~ 13767183 (-) True AMCG00020234
AMCG00020253 mRNA upstream 70249 13793197 ~ 13797273 (-) True AMCG00020253
AMCG00020248 mRNA upstream 77645 13800593 ~ 13804321 (-) True AMCG00020248
TU77394 other downstream 53845 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 122513 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 494920 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 721207 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1209493 12500424 ~ 12509937 (-) False AMCG00020180
TU77536 other upstream 82072 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 82072 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 406730 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 607574 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2375952 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile