RNA id: AMCG00020241


Basic Information

Item Value
RNA id AMCG00020241
length 267
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00020241
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13882825 ~ 13885116 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCGGCGGAAGCCCACCCGCATCGAGCTGAAGCTGGACGACATCGAGGAGTTTGACAGCGTAAAGAAGGAGCTGGAGAGCCGCAAGAAGCAGCGTGAGGAGGTGGATGTGGTGGGTGTGGCCAGCAGTGTGGAGGTAGGGGGGGCTGCAGCAGGGGGTGCAGAGGGCAAGACCCGGGAGCAAATGATAAACGAGCGGATTGGGTACAAGCCCCACCCCAAACCCAACACCCTGCCCTCCCTCTTTGGCAACCTGCAATTCTAG

Function

GO:

id name namespace
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 91144 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 132725 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 174592 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 287362 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 532554 13351248 ~ 13351534 (+) True G61676
TU77495 lncRNA downstream 3546 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 250693 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 251815 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 252821 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 311179 14195784 ~ 14218381 (+) False AMCG00020273
AMCG00020246 mRNA upstream 6862 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020244 mRNA upstream 9789 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020255 mRNA upstream 11443 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020243 mRNA upstream 37103 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020242 mRNA upstream 59880 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020259 mRNA downstream 14439 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020260 mRNA downstream 34986 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020267 mRNA downstream 65037 13949642 ~ 13949983 (+) False AMCG00020267
AMCG00020265 mRNA downstream 69882 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020262 mRNA downstream 88809 13973414 ~ 13975559 (+) True AMCG00020262
TU77503 other upstream 17525 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 49256 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 533376 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1264271 12615792 ~ 12619817 (+) True G61491
TU76877 other upstream 1346336 12535538 ~ 12537752 (+) False AMCG00020177
TU77582 other downstream 63821 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 583195 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2929769 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3574555 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 4043723 17928328 ~ 17928904 (+) True G62895