RNA id: TU77507



Basic Information


Item Value
RNA id TU77507
length 993
lncRNA type sense_over
GC content 0.58
exon number 4
gene id AMCG00020241
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13882825 ~ 13885116 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGAGTAACTTCCTGTTTTTGTGGCGGAGTGAGCGGTGTACGAGGTCGCCCGACACGGCAGACAGCGAGGCGAGGACTGGCCGGGCCGGGAGAGCAGCGCGGTACCAAGCAAGTCTCTCTGTTGTCTGTCAGCCGGCAGGGGGCACTGCTGGGCTGTGTGTGGGAGGCGGGGAGTTCCTGAGTTGCCAAGTGGATCGTGCTGTCACAGGGCTGCAATGCTGCGGCGGAAGCCCACCCGCATCGAGCTGAAGCTGGACGACATCGAGGAGTTTGACAGCGTAAAGAAGGAGCTGGAGAGCCGCAAGAAGCAGCGTGAGGAGGTGGATGTGGTGGGTGTGGCCAGCAGTGTGGAGGTAGGGGGGGCTGCAGCAGGGGGTGCAGAGGGCAAGACCCGGGAGCAAATGATAAACGAGCGGATTGGGTACAAGCCCCACCCCAAACCCAACACCCTGCCCTCCCTCTTTGGCAACCTGCAATTCTAGAGGCTGCTGGGACACTCTGGTCACAAGTGGGCCGTCCCATAGTGTGGGCACCTTCAATATGCGCTCTCCAGACCATACCATCCCATGGCCCCAGGGAGGGGTGTTATGGTTGGCACCCTTTTTCTCACTGGTTTCACCCCGATTCTGCTGCCGCTTGTATGGAAAGTGCCAGGTGTACAGCCGATGCTTGGCTGTTAGGCAGCATAGTAACAGCAATGAAACACTGGAGGCAGCTGCGGAGGGGACACTCCACCCACCTGACCTTGGAGCCCCCCGCACACACAGCCGAAGACACGCAGGGCAGGCTGGCTGTGGTCTGCTCCGTCGCCCACTGACCTGACCACGGGTGTCTCCTCACAGCGCAACGCCAACCGAACTGTTTTCTGACCCATTCAAATGTCCCAGTGGCAGCGCTGCAGCGggttagtgtttgtgtgtggagcagccctgtcatttttttttaatttttaccattaatgcaaataaatctTTGACTGTTTGTTCAACCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 89881 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 131462 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 173329 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 286099 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 531291 13351248 ~ 13351534 (+) True G61676
TU77495 lncRNA downstream 3035 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 250182 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 251304 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 252310 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 310668 14195784 ~ 14218381 (+) False AMCG00020273
AMCG00020246 mRNA upstream 5599 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020244 mRNA upstream 8526 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020255 mRNA upstream 10180 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020243 mRNA upstream 35840 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020242 mRNA upstream 58617 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020259 mRNA downstream 13928 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020260 mRNA downstream 34475 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020267 mRNA downstream 64526 13949642 ~ 13949983 (+) False AMCG00020267
AMCG00020265 mRNA downstream 69371 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020262 mRNA downstream 88298 13973414 ~ 13975559 (+) True AMCG00020262
TU77503 other upstream 16262 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 47993 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 532113 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1263008 12615792 ~ 12619817 (+) True G61491
TU76877 other upstream 1345073 12535538 ~ 12537752 (+) False AMCG00020177
TU77582 other downstream 63310 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 582684 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2929258 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3574044 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 4043212 17928328 ~ 17928904 (+) True G62895

Expression Profile