RNA id: AMCG00020243


Basic Information

Item Value
RNA id AMCG00020243
length 2400
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00020243
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13839553 ~ 13846985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCCGTGTCTGATGTTAACGGACAACGCCGCAGTATGTGCTGTTCCCTGGAGAGTTTGTATCGGGCAGGCAGTTAGAAGACAGCGACTTGAAGGTAAGCGCCACGAACAACTGTCGGAGAGTGTGCGATGCGTGGTGTAcgaaCCGTGCCAGTCTTTCCTTGCAATGCAGTCGGCCTCCTCTCTCCTGCACAGTGGGTATTTCCACCCCACCCTGCGCGCCTGGCAGAGCTGCGCCTCCGACCTGCGGCCCAGCAACCTCATCTACCCCATCTTCATCACGGACAGTCCTGATGCTGTGGAGCCCATCGCCAGCCTGCCCGGCCAGGCCAGGTATGGGGTCAACAAGCTGGAGGGGATGCTGCGCCCTCTGGTGGAGGCAGGACTGAAGTGCGTCCTGATCTTCGGGGTTCCGGCAAAGATCGCcaagGATGGCCATGGCTCGGGTGCAGACTCTGAGGACACCCCTGCCATCCAGGCTGTGCGGAAGCTACGCTCCCTGTTCCCTGAGCTGCTGCTGGCCTGTGACGTCTGTCTGTGTCCCTACACCGCCCACGGGCACTGTGGGATCCTGCGTGAAGATGGTTCCCTTGACAACGAGGCGAGCTGTCTGCGGCTGGCAGACGTGGCAGTGGCGTACGCACAGGCGGgctgtCACATCATCGCTCCCTCAGACATGATGGATGGGCGCATTGGAGCCATCAAGCAGGCCCTGATCTCCAACAACCTGggtaacaaggTGTCAGTGATGAGCTACAGTGCCAAGTTTGCCTCCTGCTACTACGGTCCCTTCAGGGATGcagcccagtcaaagcctgcgTTTGGTGACCGGCGCTGTTACCAGCTGCCGCCGGGGGCGCGCGGCCTGGCACTACGTGCCGTGGACCGAGACGTCAGAGAGGGGGCCGATGTGCTGATGGTGAAGCCTGGGCTGCCGTATCTGGACATTGTGAGAGAGGTCAAGGACAAGCACTGTGCGGTGCCGCTGGCAGTGTACCACGTGTCTGGGGAGTTTGCCATGCTGTGGCATGGGGCGCAGGCCGGCGCCTTTGAGCTTCGCGCCGCTGTGATGGAGGCCATGACTGCCTTCCGCAGAGCTGgAGCTGACATCATCATCACCTACTACACCCCCCAGCTTCTAACCTGGCTGAAGGAGATGTGAGGGTTGGACAAAACGGacggacagatggacagactgactgactgactcctCTCCAAGCCTCTTGGCTGGGGGACCCTGGAAGATGGGGACCAAAGAGACAATCCCTCCACAAACTAACTGCTCTGAGTAGCCGCACGTCATCCTCCGTGCAGGTGCCGcctgctgctgctctgtgtcAAGACACCTGCTAACCCTCCTCCCGCCAGCCAAACCACCCCCTGGCCCTGGCTCGGAGCGGCTGGGGCCCTCTGGGTGGTCAGACTGGTCCTGAATGTAACGGTGCCTTTATCATAATCAATAAAGACTAATGGGCTGTTTGAGTGTCTGAGAGTCTGTTCTTTGTCTCACTGTCTGTGTgaaagtgtatatatgtgtatgtgtctctgtgtgagtgtggcAGAGGGTAGTTTTGCATACTGGAATGCTTCTCCATATGTGAATTTGCCTGTGTGCAATTTGACTTGTGTGTgttctcagtgtgtgtgcaaattaagcctttgtttgttgtctgtggtgtttgtgtgtgtttcagtgttcgGAGTGGTATATGTCTGTTCAGGGACGTAGCCAGGATTTGGATGTGATAGGATGTGCAGGGCCCTCTTCCTCTTAGGGCCCCCTGACTTTGTCATCACCTTTCACCCCTTTACCAtgaccctgtgtgtgtgagtgcggtTATGTCAGTGTGGACACAGCGTTGTGCAATACTGATTTCACCATGTTTTGAAAGCAGGGAAGTGAGCAATACTGCACAGTGGTGCCAGGATGCACCTGGGCTGCTCACTGCTAAAAGGAGAGACCCGATGAGCAGGTTTAATGAGTCAAACGCATCGAATAACATCACCTGATAAGTACTGGATATAGAACGCAAGGGTTCCAACTGCCATTAAATGACTTGTGCTTGAGATGCTGAAGCTCAGTTGTGCACCAGAGGGCGCTCTCTTGCCACAAATGCAGCCGAGTGAATGGGACCCTGGACACTCCTGCGTTGACAGGCTGCATGCCTCACAAGAATACATTACTTTGATCCAGCAGGTGGATTTATGATGTGTTCACCATGGTACGACATAGTCCCAGTCTTATTTAATGCACAGGAGATGTGGCTGACTGGACGAATACACTGCTCACTAATCTTGCTTCTCCTCTCAGCGTATAATAGCAGTGTGCTCCCAcacgttgttgttgttattattgttattattattattattattattattaagcctGGACCCAAAT

Function

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004655 porphobilinogen synthase activity molecular_function

KEGG:

id description
K01698 hemB, ALAD; porphobilinogen synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 46609 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 88190 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 130057 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 242827 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 488019 13351248 ~ 13351534 (+) True G61676
TU77505 lncRNA downstream 30326 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 35840 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 41166 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 288313 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 289435 14136420 ~ 14136936 (+) True G62013
AMCG00020242 mRNA upstream 15345 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020245 mRNA upstream 49568 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020247 mRNA upstream 79878 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020232 mRNA upstream 103101 13732640 ~ 13736452 (+) True AMCG00020232
AMCG00020227 mRNA upstream 199625 13625863 ~ 13639928 (+) True AMCG00020227
AMCG00020255 mRNA downstream 17031 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020244 mRNA downstream 26796 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020246 mRNA downstream 28656 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020241 mRNA downstream 37103 13884088 ~ 13884605 (+) False AMCG00020241
AMCG00020259 mRNA downstream 52059 13899044 ~ 13911515 (+) True AMCG00020259
TU77491 other upstream 4721 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 488841 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1219736 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1301801 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 1301801 12535538 ~ 12537752 (+) False AMCG00020177
TU77503 other downstream 16492 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 101441 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 620815 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2967389 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3612175 17459160 ~ 17471869 (+) True AMCG00020371

Expression Profile