RNA id: AMCG00020244


Basic Information

Item Value
RNA id AMCG00020244
length 519
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00020244
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13873781 ~ 13874299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGGACGGTGAGGGGGAGCTGCGGCCGGAGGCAGGGCCAGTCTTGGAGCACCCAGCAGGGGATCCTTTGGAGCCCACCGTCCGGCCAGCCAGGGACAGCCGCAAGCTGGACTGCATCATCTGCTACTCATCCTTCAACTTGGGCGAGAGGCTCCCACGTAAGCTCTACTGCGGCCACACATTCTGCCAGGCGTGCCTGCTGCGGCTGGACACGGTGCTGAACGAGCAGCTGTGGATCCCATGCCCACAGTGTCGCCAGAACACACCACTGCCCAGGGCTGGCGCCGCTTCACTGGACCTGGACCTGGCCGCCTTTCTGGGCGCCAAGGCGGAGGCAGAGAGCCAGCGACTCAGCGCACGACCTGGTGAACCTGCGACTGAACGCAAGCTGCCAATAGGcaagcagccaatcacagagcagcccCTGTCTGCCTGGGGCCAGGACACACCCCCAGAGCCACACTTTCCCAGGAGCCCCTGCTGCAGGAAGTGCTggtcctgctgctgctcctaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 80837 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 122418 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 164285 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 277055 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 522247 13351248 ~ 13351534 (+) True G61676
TU77505 lncRNA downstream 3012 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 8526 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 13852 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 260999 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 262121 14136420 ~ 14136936 (+) True G62013
AMCG00020255 mRNA upstream 1136 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020243 mRNA upstream 26796 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020242 mRNA upstream 49573 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020245 mRNA upstream 83796 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020247 mRNA upstream 114106 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020246 mRNA downstream 1342 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020241 mRNA downstream 9789 13884088 ~ 13884605 (+) False AMCG00020241
AMCG00020259 mRNA downstream 24745 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020260 mRNA downstream 45292 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020267 mRNA downstream 75343 13949642 ~ 13949983 (+) False AMCG00020267
TU77503 other upstream 7218 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 38949 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 523069 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1253964 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1336029 12519764 ~ 12537752 (+) True AMCG00020177
TU77582 other downstream 74127 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 593501 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2940075 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3584861 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 4054029 17928328 ~ 17928904 (+) True G62895

Expression Profile