RNA id: TU77473


Basic Information

Item Value
RNA id TU77473
length 3127
lncRNA type sense_over
GC content 0.44
exon number 2
gene id AMCG00020245
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13787014 ~ 13792944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTGACCCTGATGCTGCTGGACCAGAACAACAGGGAGCATGTGATCGACGCATTCCGGCCTGATgtcacctcctcctccttccagCGGCCGATCAGCGAGATGAACATCGCCAGCGGCTGCCCCCTCTTCTGCCCACTGGCAAAGCTGAGTGGCGCCAAGAGCTCTTACCTGCGGGATGACACCATCTTCATCAAGGCTATCGTAGACCTCACTGGACTCTGACCAGTGCCGGCACCTGCAGGGGGCGGAGGAAGGGGTACCTGTCACAAACAGGGCAGAGAGCTAGACGCTTGGGCACACAGCAGACTGCTAGTCCGAGTTCAGCAAGCGCATGTAACGGGGCTCATCAGGTGTATGAGCTTATTACAGgtgacgtaacccctctgtCAATCAGAACGGTGATAAGCCTCCCAAGTCAGGAGACAAGGTATTTTGGCGTAGCAAGGTTTATTGCTCTACTGGGTGGAACTGCTGCGGTGCGGATCGCTCGGAGGAGGATCTGTGCGACACAGGGAGCTCCGACTgcaccagctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatctgagtCAGTAGAATTTACATCATAAATGCACAGATTATACTGTATGAATGATATCATGTGTGCATTTATACACCCAGGTCCACTCCAATTACATAAAGCGGCCCCAATTACAAAGAATAATGAGTGTTCGTCAGTGCCCTGACTGGCTTGCTGTTTGCTGACCCGCTCGATCCttattcattctttttaaaGCCTACCCTCCACTGTTGCCTCACTGATGCAAGAGTCTAGACTGTGACCTTCCACTCTgtatcactatatatatatatatagataaatatatctgtgtgtgttatacTGCTCTGTTGCTGATGTTTCCAGACTGCTGTATtgggagcagagcagtgtgcCCCACAGACatgcatgcgtgtgcgtgtgtgtgtgcagtgatcTCAGTTGTATGGAAAATGACCAGGTGACTTTCAAACACAGGTTCTAACATCTTTCTAACATCAGTCACCACAGTGAATGTGGTAACTCCCCAGAGCACACAGGCCAGTGAAAAGAATATCACCCCCGTGGCAGGgcggtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcctctgcctctgcttCTGGACACTGAGCAGATCAGGGACAGACCTGGGAAGATGCAGGGCTGTATTCCCACATCAATCTGCAGAGCCATGAAGGCTTCTGTTAGAGTCACACctcacagtgagagagagatggtagAGAGAGTCTAGTTCCccttaatattgaaaaataaaaaagacgtAAATCTTTCTGCTTAGTTATAATTATGTGATTATGGTTTCATGGGCTCCAGAAGGCTCGTCTGGCCACAGTGCTCGGCAGAGTGCTGGTTGGGCCCTGTAATCCAGACCACAACATACAGAACTACTAATGTATATAGGTCCTGTCCCAGCAGACAGAAGGCATTTTCAGAGCTGCCTGTGGAGTGGATGCATTGGGCAGAGGAGTGAGGACAAGTTGTCTGTCTCTCCACCTGCCTGGCTGCCTGcccgtctctgtgtgtgtgtgtgtgtgtgactcctGTACAACTGATGCACACTGTGTAAGGGGCCCAGCTGTATAGAGCTATACATATTCATTCATATCGTGGTCTAGGACATGATTTATTGTTATAGTCATATACTGGAAAAGCCCTGCATGCTTCCCCATAATGAAACAGCCTCTAAGGATggcaatattaaatataattattaattaaaataatataatattaatatatgaatataataataataataataataataataataataataataataataataataataataatacttattttatagaaaaataagtacattttataGAACCAGAGCCTGTACTGTGTAGGAAAGAGGTGGTTCCTGGACAGCAGAAGAGGGGAGGAGAGTGGGCAGTATTGTACTCCCACTACTTAAAACAGTTGCTTTAtccagcaatttattttttaatgatttgtatcACCTGAAATGATAGGGTCCGTCAGTGAGTGTGCTTGCTGCGactggaatgtttttttatgtgcatCTTATATAGCTCAGTATAATTATTGTATATAGACACTGACATTACTTTTAAGTAAGTTGACTTTTCTAGCtgtacagtaaattaaatgccAAAGTGCttagtaaatttaaaaataaatatagaacaattatatatagcatttaaatgcaaataaacacattgcatAAGATTGCCTATCACACGACTCAAGGCTAAGCCAGTGTGGGGAAGTGACTGAACCTTTGTGAAGGGAGACCTCTGCTGGTCACCGAGGTCTATGGCACCTGCCTTTAATCCAGCAAACAGTACTTGCAGTGAAATGCAGTGCAAATGAAAGTGCATcatagtatactgtagtgttGTGCAGTTCAATGCACTGTCGGAGGGTGTTACCTGTTACTTTCTTCCCCCTTGGTGGAGTGTAGCAGTGCCCCTACACTCCGATCAGCTCTCCTGACCACCCCAGGGCCGCCTATGTCCTCTGCCCTCTGTCCTTAGTCTCTGTGCTCCAGTTGTTTGTCGAACCCTGCACCAGCCCGAGCCCAGTGCGATTTCTTCCCCTGTGAAAACCCTCCCACATGGGTCGAGACCATATGATAGCATTGCCTGCTCAAGCACAATATTCTATGATTAATATGCAAtgataattacaaaaacatgacttgttttttaatacttacTTTAGCCTTTAATATTTACTACCAAATATGTAAAATTTCATATGTACTTGTACTGAAATTCTGTCTCCTCACAGCCTTCCACGTTTTACAGTTTTAcgttttacagttttacagattttcagttttttatgttttaatttaggtGCCTAAATGTAGTATAAACTTGCCACTGAATTCAAGTTTAAGTCTCAGTTCACTTATATATTATTGCCCTAAATCCTAATGACCTAATGAGGGAGACAGCACAGCATGCTACTATACTGTTTAcctgtgacatttaatttaatacttaATAAAGGTAAATCCAATGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77450 lncRNA upstream 38399 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 80266 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 193036 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 438228 13351248 ~ 13351534 (+) True G61676
TU77199 lncRNA upstream 440616 13348855 ~ 13349146 (+) True G61674
TU77505 lncRNA downstream 84367 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 89881 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 95207 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 342354 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 343476 14136420 ~ 14136936 (+) True G62013
AMCG00020247 mRNA upstream 30087 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020232 mRNA upstream 53310 13732640 ~ 13736452 (+) True AMCG00020232
AMCG00020227 mRNA upstream 149834 13625863 ~ 13639928 (+) True AMCG00020227
AMCG00020228 mRNA upstream 176384 13597969 ~ 13613378 (+) True AMCG00020228
AMCG00020226 mRNA upstream 194311 13592096 ~ 13595451 (+) True AMCG00020226
AMCG00020242 mRNA downstream 28817 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020243 mRNA downstream 46609 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020255 mRNA downstream 71072 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020244 mRNA downstream 80837 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020246 mRNA downstream 82697 13875641 ~ 13877226 (+) True AMCG00020246
TU77200 other upstream 439050 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1169945 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1252010 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 1252010 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 4001710 9784117 ~ 9788052 (+) True AMCG00020105
TU77491 other downstream 40226 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 70533 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 155482 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 674856 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 3021430 16814374 ~ 16815857 (+) True G62632

Expression Profile