RNA id: AMCG00020251


Basic Information

Item Value
RNA id AMCG00020251
length 2411
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00020251
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13877282 ~ 13882189 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttttttatggtATTTCTGCCGCTCTCCTCCGGATCTGTAGAGGGCGCTGTAGTTATACACGCGTCCTGCCGGCGACTGTCTCACACTAAACGCGGCTGTTTCGTCCGGTGATACAGTGAGACAAGTCATTTCCAGTGTGCTGTGAGTGCTCCTGCCCTGCAATGTCTGATGAGGAGGAGGCCCCCCCACCTCTGGTGAAGAGGCCACGGATCTTCTATGGCAGCCTGGAGGAGAGGGAGCGGGAGCGCCTGGGCCGGGGGGACAGCGCCGCCTCCGGCAGGGAGGCCTTGAAGGCCGGGATTGAGTCCGGAAACATCAACATCTCCAGTGGCGAGTCTCTGGACCTGGAGGAGCGGGTGAGCGAGCGACAGGCGGAGGTGCTGGCAGAGTTCGAGCGCAGGAAGCGGGCTCGGCAGATCAATGTCTCCACGGACGATGCTGAGGTCAAAGCCTGCCTGCGCGCGCTGGGGGAGCCCATCACGCTGTTTGGGGAGGGTCCTGCAGAGCGCAGAGAGAGGCTGAGGAACGTCTTGTCGGTGGTGGGGACGGACGCACTGAAGAAATCCAAGAAGGATGACGAGAAGTCCAAGCGTTCCCAGGACGAGTTCCAGCAGACCTGGTATCATGAGGGGCCATCCACACTGAAGGAGGCCCGGCTCTGGCTGGCCCGCTACTCTCTGCCCAGGGCGATGCGGCGACTGGAGGAGGCCCGGGCCCATAAGGAGATTCCGGAAGCCACGCGGACAGTACGGCAACAGGAGCTGCACAAATCATTGCGGAACCTGAATAATTTCTGCAGTCAGATCGGGGATGACCGGCCCATCTCCTACTGCCAGTTCAGTCCTAACTCAAAACTGCTGGTAACTGCGTCCTGgagTGGTCTGTGTAAACTCTGGTCCATCCCTGACTGCAGCCTGATCCGCACTCTCAGAGGTCACAACACCAACGTGGGCTCCATCACCTTCCACCCGCAGGCCACACTGTCTCTGGATGAGAAGGACGTCAACCTGGCATCCTGCGCCGCCGACGGCTCTGTCAAACTCTGGAGCATGGACAGTGATGAGCCAGTGGCTGACATTGAGGGCCATTCCATGCGGGTGGCACGGGTCGCCTGGCACCCGTCCGGCCGCTTCCTGGGCACCACGTGCTATGATCACTCATGGCGCCTGTGGGACCTGGAGGCGCAGGAGGAGATTCTGCACCAGGAGGGTCACAGTAAAGGTGTCCATGACCTGCATTTCCACCCTGACGGCTCTCTGGCTGGCACCGGgGGTCTGGACGCGTTTGGCCGGATTTGGGACCTGCGCACTGGCCGCTGCGTGATGTTCCTGGAGGGACACTTAAAGGAGATCTACAGCATCGACTTTTCACCCAACGGGTACAATGTGGCCACAGGCAGTGGAGACAACACCTGCAAGGTATGGGACCTGCGGCAGCGCACGTGTACCTACACCATCCCAGCCCACCAGAACCTGCTGTCCGGGGTCAAGTTCCAGCccgTGGATGGGCACTACCTGTTGACAGGTGCGTATGACAACACGGCGAAGGTGTGGAGCCACCCGGGCTGGTCACCACTGAAGACGCTGGCAGGACACGAGGGCAAGGTGATGGGGCTGGATGTGGCACCAGATGGCCAGCTCATTGCCACCTGCTCCTACGACCGCACCTTCAAGCTGTGGATGTCCGAGTAAGGGGGTGTGACCCCCTCCCCCGTGACCACCACACACCCCCACAACCACGAACAGACTCTTACAGTCCCGGCTGCACTACCTATTCGCCGTGCAACCACAGTCTCTCCCTTGTCTCTAAATTGCAGAATTTTTAAAGCGTTAATTACTGAACTGATCACAAGGCATTTGGTCCTAgtctttttaaaacagatttgtgGTGCCCTAGGGATCCTGCTGgggaatctctctctctctaggacAAGGCCAACAACTCCCCCGAACGCCACCCTCTGTATTAGTCATTAATTCACCAGACACAGTCAAGAGCTACAGAAGCCTGTAAATGGACCAGAGTAATTAGTGATGCAACAGCACCCTCCTGTGGAGATGTGGAATTTCAGCTGAATTTCTGGCGGCCAGTGCAGTTTCCCTGACTGGCTGAGACGGCCATCCTGTTGTGCCACTTAGGACCCACACTGGACTTGCACCAGACCAGCTGCACATTtgtcaaaggtttttatttttattttatttcaggtcattaaaaaaaataaataaaaggtataCAAAATTCTCAGAAAGAACATGCCGTGTGAGAAGCACGGATTCGTGTCGATAGTGAGACGTGTCCTGGGTGATACTTTGTCAAATAAAGTATATTCtctgatttttcatttttacaaatgAATCCAGAttttttgcgtgtgtgtgtgtttgtaaaccaTTTAGTCTTAATTCAG

Function

GO:

id name namespace
GO:0060041 retina development in camera-type eye biological_process
GO:0008380 RNA splicing biological_process
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K12662 PRPF4, PRP4; U4/U6 small nuclear ribonucleoprotein PRP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77551 lncRNA downstream 49017 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 53742 13821748 ~ 13823540 (-) True G61927
TU77540 lncRNA downstream 64279 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA downstream 64279 13811971 ~ 13813003 (-) False AMCG00020256
TU77532 lncRNA downstream 84351 13789391 ~ 13792931 (-) True G61920
TU77567 lncRNA upstream 30983 13913172 ~ 13914166 (-) True G61943
TU77717 lncRNA upstream 463108 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 471301 14353490 ~ 14401302 (-) True G62066
TU77815 lncRNA upstream 821322 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 1149946 15032135 ~ 15034076 (-) True G62191
AMCG00020254 mRNA downstream 24813 13850330 ~ 13852469 (-) True AMCG00020254
AMCG00020257 mRNA downstream 28198 13848344 ~ 13849084 (-) True AMCG00020257
AMCG00020258 mRNA downstream 39064 13837802 ~ 13838218 (-) True AMCG00020258
AMCG00020249 mRNA downstream 42553 13826028 ~ 13834729 (-) True AMCG00020249
AMCG00020250 mRNA downstream 56886 13814222 ~ 13820396 (-) True AMCG00020250
AMCG00020261 mRNA upstream 4195 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020270 mRNA upstream 256223 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020269 mRNA upstream 266385 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020274 mRNA upstream 359676 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020278 mRNA upstream 430223 14312412 ~ 14314001 (-) True AMCG00020278
TU77536 other downstream 68949 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 68949 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 211697 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 280365 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 652772 13221600 ~ 13224510 (-) True AMCG00020212
TU77648 other upstream 247489 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 448333 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2216711 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 2216711 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 2236800 16118989 ~ 16120153 (-) True G62409

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU454231 True 640 lncRNA 0.45 3 NW_019172913.1 742936 ~ 746773 (-)