RNA id: TU77538


Basic Information

Item Value
RNA id TU77538
length 2183
RNA type TUCP
GC content 0.50
exon number 4
gene id AMCG00020252
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13805020 ~ 13808333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCTGACTCCGCTTCCTCTGTCAGTCCCCCgcagtccctctctctcacacaccgtCGCCGAGACTCCTCACCGCGGCTTCCACATCCACTGCACACCGCCGTCCACCCAGCCATGGCCAGTCAGTCGCAGGGCATCCAGCAGCTTCTCCAGGCCGAGAAACGAGCGGCAGAGAAGGTCGCCGAGGCCCGGAAACGGAAGAACCGGCGTCTGAAGCAAGCCAAGGAGGAGGCGCAGGCAGAGATCGAGCAGTACCGGCTGCAGAGGGAGAACGAGTTCAAGACCAAGGAGAAGGCGGCCCTGGGTTCCCATGGTAACTCCGCTACTGAGGTGGACAAGGAGACGGTGGACAAAATTAAGATGATCGAGAGGAACTACCAGCAGAACCGCGAGACTGTGCTGGCCAGCCTGCTCACGCTGATCTGCGACATCAAGCCTGAGATCCACACCAACTACCGGATCAGCGGCTAGAACCCAGCCCGGCCCGGCCCAACGCAGCCCCTCAGAGACCCGCAGGACGACCTGGTGCAGATTCCCAATGCACAGCACTGAAGGCTGCAGGGTCTGCTGTAGAAAAGGCCAATCCCTGGTGCTACCTGAAATAATACTGTTTtgcctggtctctctctctctctgtttgtgtatatataaatatttatatatacacacacatacatgcatgcaggGTGAAGAAGCTGTGTACATTTATAGTTAAACAAGATTTTCATCTGTCACAGAAAAATGCCTTGAAGAAAAGACAAGATTGAAACTTTTTataaaagcatatttatttaacctcattaattaataaaagtattCACCTGTGTGGTGACTCTTGCttcaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtatatatatatatatatatatatatatatataaaaaaacttaataactaaatcaatacatttacagactCTTGCCATGTTAAAAGGGTCACTCCTCTCCAAAAAAGTAAATCTGACTGTGACACAGACAACACCGAGCACCACAGGGAGCAGACTGCAGCCTGTGAGTGTGTGCTGTAGCGCGGGCCCTGTGTGCTGTGCAGAGTCTGTCACAGACGCTCAGTGCAGCTCGGCTGTGTCTGCGGGGGTCCCTGTATCATGGCAGGTCTGTTTGTTcgctgctctctctgtctgggcAGAGTCCGGCCCACATCCCTGCAGCTCCCTGGAAGACCCAGATCCGTGTGCTGTGCACTGGGAATTGgcctgcccccctcccccgcgCTGGGCCATGTAGCTGTGTGTAGGATTATTAGGATGCGTGTTCGTGATACCTGAGCGTGTGTTGGCAAGTGTGTCTGATATGATCACACAAAGTgctgtcattgttttattttaaatgtgttaaaaaaaaaaaaagttgtttggTTGTGATggacagagaggcagaggtGCTGTGGACAgtcagggtggggggggggcagggattATCTCCGGACTCCCTGCAGCTCGAACCCTCAATTTatgggctggagaccctgctgtactgtactgtactttgacCCACACACTTCTCTCATTCcttcctccctttctctttGTCCCGCTGTGTCTCTCTCGTGAGGTGGACAGAACAGTCAGTCTGGGTGATTCCCCCACCCCTCACCCTCAGAAGCCCTTTAATAGCAGGTCTGTTTCTCTGCAATAACGTGATCCCCATCAGTCCTGCAGTGTCTCTGCTCCCCCCTCTGCCTCTCGAACCCTGGTCAGTAGAGTTGCTGTGTAGCCCCCTGGTGGTGGGAGAAGTCGTATTGATTAAAATCTGTCTGTATTGAGGTCTGTAGATCTAAACCAGAGACCGGCCAGGACAGAACCCTGCTGTAATCCCCTCTCCAgcccctgtctgtctctcttctctctccttgtGTCTGTCTTTTACTCTCTTTATCTCTCCTTCCCTGTGTATTTGGCTCAGTATATTTCTGCAGCTTcacttttcattctttctgtATATCCAGATCTCATCTTTTTCActctcgtctctctctcccagtatATTGTGTTGAATTGTCTTCAATGTGGTGCGGTACCTTGGGGCAGAAGCTGTTGCCGATTGGGTCAGCTAGCCTGGCAGgtctgtttttgttggtttctgagtaaaaacattaaaaactgctCTTGTCTGCTGTGGGTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77532 lncRNA downstream 12089 13789391 ~ 13792931 (-) True G61920
TU77451 lncRNA downstream 53722 13751084 ~ 13751298 (-) True G61872
TU77364 lncRNA downstream 151641 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 354958 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 466919 13337016 ~ 13338101 (-) True G61696
TU77540 lncRNA upstream 3638 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 3638 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 13415 13821748 ~ 13823540 (-) True G61927
TU77551 lncRNA upstream 16356 13824689 ~ 13828265 (-) False AMCG00020249
TU77567 lncRNA upstream 104839 13913172 ~ 13914166 (-) True G61943
AMCG00020248 mRNA downstream 699 13800593 ~ 13804321 (-) True AMCG00020248
AMCG00020253 mRNA downstream 7747 13793197 ~ 13797273 (-) True AMCG00020253
AMCG00020234 mRNA downstream 37837 13760414 ~ 13767183 (-) True AMCG00020234
AMCG00020239 mRNA downstream 59587 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020233 mRNA downstream 74536 13723015 ~ 13730484 (-) True AMCG00020233
AMCG00020256 mRNA upstream 3080 13811413 ~ 13812141 (-) True AMCG00020256
AMCG00020250 mRNA upstream 5889 13814222 ~ 13820396 (-) True AMCG00020250
AMCG00020249 mRNA upstream 17695 13826028 ~ 13834729 (-) True AMCG00020249
AMCG00020258 mRNA upstream 29469 13837802 ~ 13838218 (-) True AMCG00020258
AMCG00020257 mRNA upstream 40011 13848344 ~ 13849084 (-) True AMCG00020257
TU77394 other downstream 139435 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 208103 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 580510 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 806797 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1295083 12500424 ~ 12509937 (-) False AMCG00020180
TU77648 other upstream 321345 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 522189 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2290567 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 2290567 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 2310656 16118989 ~ 16120153 (-) True G62409

Expression Profile