RNA id: AMCG00020255



Basic Information


Item Value
RNA id AMCG00020255
length 915
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00020255
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13863477 ~ 13872645 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACTGCCTGCGTGGGGAGATGGACGGTATCTCTCTGGACAACCCGTACGGCGATGTGATCATCCCCCGCGCCCGGCTCAGGACCACGTCAGAGGACAACTCTGCTGCCGGTGACTCCAGCACCATCATCACCAACCCACTGGCCCTCAACACCACCTTGTACCAATCACACAATGACCGCAACTCTGCACTCAACCCTTATGGCAACTTCCACCCACATGGCTCTCAGGTGCCGCACACCATGCCGGTGTACACCGTGGACACCAAGAACCCACCGCCCTATGAGCTGCAGATGCCCAGCTACACCGTCAAGGAGGACCCGGAGGAGGTCACCCGGAGGTGCTGTGCCAGCTGCCGCTCCTGCAGGAGGAAGAAAACTCAGAGCTGCTGTGGAATTACCCTGCGGGCCCAGGACCGGCGGCCCTGTACATCCAATCTCTCCAGCCGCTTCACCCACCCTGTACTGCGAGAGTCAGGACTaGAAAAGAGTGAAGAAGGGTTTCGGGACTCAAGCACCCTGGGAAAACGAGCTGAAATGGGGGCAGGCAAGCTGCTGGGGTTGGCTGGGACCGATACCCGAGCTGAGTCAGCAGCCACCCATTTCAACAGCTGGCACCCAGGGGCAGCGCAGACTCACCGCCATGCACCAACAGGTGGACAGGTGAGTGGCGCAGAGTGGTGCCGGCTGCAAGGTGGACCGTACCAGACCGGCACTGGGACTCTCGGGCCAGTGAGACTCACCCAGCTCTCGCTGCAGACTGACACTTTGCTGCACGGCTCCCACACCGAAAGGCAGGACTTGGACAGGTGGACTCACAGCCAGTACTCCCCAGCCCGGTCCGGCCAGCATgggcagcagcacagagactCAGCAGCCAGCCACAGACCTCAGAGGGGCACTGTAGATATctag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 71072 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 112653 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 154520 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 267290 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 512482 13351248 ~ 13351534 (+) True G61676
TU77505 lncRNA downstream 4666 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 10180 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 15506 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 262653 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 263775 14136420 ~ 14136936 (+) True G62013
AMCG00020243 mRNA upstream 17031 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020242 mRNA upstream 39808 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020245 mRNA upstream 74031 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020247 mRNA upstream 104341 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020232 mRNA upstream 127564 13732640 ~ 13736452 (+) True AMCG00020232
AMCG00020244 mRNA downstream 1136 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020246 mRNA downstream 2996 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020241 mRNA downstream 11443 13884088 ~ 13884605 (+) False AMCG00020241
AMCG00020259 mRNA downstream 26399 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020260 mRNA downstream 46946 13919591 ~ 13944753 (+) True AMCG00020260
TU77491 other upstream 29184 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 513304 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1244199 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1326264 12519764 ~ 12537752 (+) True AMCG00020177
TU77582 other downstream 75781 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 595155 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2941729 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3586515 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 4055683 17928328 ~ 17928904 (+) True G62895

Expression Profile