RNA id: TU77503


Basic Information

Item Value
RNA id TU77503
length 2939
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00020255
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13863477 ~ 13872645 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGTTCAGCGAGCAGAGAGCACAGGTATGCTCCCGCAGCTAGCACACAGATGACACCTGCACACAACAAGTAGACTGTCACTGCCAGGGGAGAcgcattattttttacaaagcaGTAACCGAGAATCTCAGAGCTGAGGCTTGAGGAGGACCGCCGATTCTGTACCGCAGAGCAGGAGAGGGGCTGTGTTTCAACCCAGAGTCGCTCTAAGGGATCCAGCCTGTTTGCTGAGGGTGGAGGGGGATTGATGCGATAATAGACAAGtacttcagagagagagagagagagagagagagagagaggaaatccAAGGCCTACACAAAGCAGCTCCAGCCCAGAGGGAGGCGAGTGAGAGAGCTGTGTCCGGCTGCTGTTCCTGCACCCGTGTTATGAACTGCCTGCGTGGGGAGATGGACGGTATCTCTCTGGACAACCCGTACGGCGATGTGATCATCCCCCGCGCCCGGCTCAGGACCACGTCAGAGGACAACTCTGCTGCCGGTGACTCCAGCACCATCATCACCAACCCACTGGCCCTCAACACCACCTTGTACCAATCACACAATGACCGCAACTCTGCACTCAACCCTTATGGCAACTTCCACCCACATGGCTCTCAGGTGCCGCACACCATGCCGGTGTACACCGTGGACACCAAGAACCCACCGCCCTATGAGCTGCAGATGCCCAGCTACACCGTCAAGGAGGACCCGGAGGAGGTCACCCGGAGGTGCTGTGCCAGCTGCCGCTCCTGCAGGAGGAAGAAGTGAGTGGTGTGTGTTTAACaaaagtgagaaagagagagacccTGGGCTCACAGCCACACACTCAGCACAGACTGCTGCCTCCTTTCCTTTTCCTGCTTGCAGCACCGTAGGGCTCTCCCACACACTGCTCGTTGTGCCACTCCACTCCAATCCACTTTTGTTCCAGACCTGTGTTTCCTGTGACTGAGCAGCAGGGCACATTGTGTGGGGTCAGCACCGTTGTTTCAGAACTCAGAGCTGCTGTGGAATTACCCTGCGGGCCCAGGACCGGCGGCCCTGTACATCCAATCTCTCCAGCCGCTTCACCCACCCTGTACTGCGAGAGTCAGGACTGTGAGCAATCACACGGGCTTGTGAGACAAACACCAGAGTTCAGCTGGCTGATCTGTTTCCTCCATGTTGCAGTGATCGGTTATGTATGTCCAGTACTGATGGTATTTGAGATGCACTTTGCTCTATTTATATGACTCTGTCATGAACTGACTTCTCCCACAGGTTCGTGTGGTACcgcatttgtattgttttgctttgtatatcaccagtatttttgtttttaaaattcagtttttgtgtCTAACCTCCTCGTGACAAGGTGTGCAAATTGTAAAAGCCAGCATTAGGTCCAggaaaaattacattgaattgAAAAGGTTTCCCAAAAGCTCTGTGTGGCGCTGTAAAGCTGGGGGGACTAGTGGACAGTGCAGGTTTACTGCAGTGAAGGTAACAGACTCATCAGTACAGGGGGTCTGGATACTGCCCCTAGCCGTCCCTGCCCGGCCACACAGTCCTGTTAATTTGCACATTAAAAGGATCTTAACTGCTGACCCGGCTGTATCTTTGCTATTGtccagtctgtgtctgtgagtctaCTGCACAGGACTTGGGGGGACAGTGTTTAACAGTGTTTGATAATGGTCAACAGTGACAGTCACAGAGAGGGCCGTCTCAGACCCAGGGTTTTCAGGCAAGGGGCGCGACTTCCGCTCAGGTTTTGATCAGAGGCTGCTTCACAGAGGGTGGAGGAGGGGAGCTGTGCAGGCGTTCACCAGGGCACAGCAAGACACCCTGACAGGAACAGCAACACCCCGGCCAGCTCAGTCTAGCGGCACTTCCTGCTTTTGAGCTGCCAGAGGAAACAAGGAACCAAACTGCAAAACAAGACCTCTCCAAGACAATAGCTCATTAATGACATCACCTTTTTGATATGAAAGGCCAAACAAACTGGTTTCAATGGTTACGAGTGAGCGGATCCATTCTTGTAAACGTTTTGCTGTTTGCATTGGGGGCAGATCTGTGTACGCAGTGATGTATGTCAGCCATCCAGTCAAGCAAGTCTTCATGGAGAGTAGAACAAAAACACCAGGCACATTGTGGGAAATTATAATGCTAATAAACAGGTTTTTCCACTGTGTTGCACAATCATGTCAGAAGAATGGTATTGCTAGAGGAATCTTGCAGTAGTAAAGTCACCTCTGAGAGACTGTACTTTTCTTCTGTACAGCATGTTACATAAATTgtattgcaatttgtatttttttaaactataaattaaagcaaactgtTGATAATCATGGACTGTGGTAGGAAGAGTTTTATGAATTGTTTACAGAAAAATTGATTTACCGTCAAGGGAGTTTCAGCATCTTTTGCAAACAAATTCAGGTTCAGACTCCCGCGCCTTCTGAGATTAAagagctgctgtgtgtttgcaaTCGATAAACCTCCTCGTTGGTATGGTCTTCATTACGGTCTCTACGGGGCTCTGTGACTCAAGATACTGTCCATCTAAGCTTCACATTTCTGATGCTTTGCAAACTTCTGTCCTGGACTGACAGCAGGGTCCCTCTGTGTATGATGTTAAACGGGACTTAACAAGCATTTATTCTGAATAAAGGACACCAGCAGCTCCTATGAAAGCTCTGTCTGCAGGTCAGTCCAGGACTGTCAGGACTGCAGGACAATCAATATATCTTAAGTTATTGGAATTATCTGTGCGGACATGGCCATTATCTTTAAGGGacaaaacatgtcatttttttCCGACCCACAAAATAAATTTCTTAAGAACGAAGACATATTTTGTGAAAGGCTCATGttgttgtaattttgtaatggaataaatataatgtgcaccttaaataataatacaaataaggtGAATGTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 70533 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 112114 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 153981 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 266751 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 511943 13351248 ~ 13351534 (+) True G61676
TU77505 lncRNA downstream 10748 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 16262 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 21588 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 268735 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 269857 14136420 ~ 14136936 (+) True G62013
AMCG00020243 mRNA upstream 16492 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020242 mRNA upstream 39269 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020245 mRNA upstream 73492 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020247 mRNA upstream 103802 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020232 mRNA upstream 127025 13732640 ~ 13736452 (+) True AMCG00020232
AMCG00020244 mRNA downstream 7218 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020246 mRNA downstream 9078 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020241 mRNA downstream 17525 13884088 ~ 13884605 (+) False AMCG00020241
AMCG00020259 mRNA downstream 32481 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020260 mRNA downstream 53028 13919591 ~ 13944753 (+) True AMCG00020260
TU77491 other upstream 28645 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 512765 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1243660 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1325725 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 1325725 12535538 ~ 12537752 (+) False AMCG00020177
TU77582 other downstream 81863 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 601237 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2947811 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3592597 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 4061765 17928328 ~ 17928904 (+) True G62895

Expression Profile