RNA id: TU77540



Basic Information


Item Value
RNA id TU77540
length 416
lncRNA type sense_over
GC content 0.61
exon number 2
gene id AMCG00020256
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13811413 ~ 13813003 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGTTGCAGGGCCGGAGTCTTGTCACTGTCGGACAGCAAGGAGATAAGGATCCGGATCTGAGACGCCGAAACACCTGCAAACGAGTAACTTATCTGGGTGACCttgtgtgtcgtgtgtgtcTCTGATCGAGGTTCTGGGCGAGCCATTAACGAACCGAACTGAACCGGGCCAGCAAAGTGCGCCTGTAAATTGTATCCGGCTGCCACTTGTCCCGGCGAAGACAGACTGCAGGGCAGCGTGTGCCATGCGTGTGCGCTGGGTGACATGGGACGTAAAGGACACGTTGTTGCGCGTGCGCCACTCAGTGGGGGAGCAGTACTGCGGTGTGGCGCGGGAGCTGGGCCTGACCCTCGACCCTGAGGCCGTGGAGGCCGCCTTCCATAGCGCCTACCGTCAGCAGCAGCGCCGGCAGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77532 lncRNA downstream 19040 13789391 ~ 13792931 (-) True G61920
TU77451 lncRNA downstream 60673 13751084 ~ 13751298 (-) True G61872
TU77364 lncRNA downstream 158592 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 361909 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 473870 13337016 ~ 13338101 (-) True G61696
TU77549 lncRNA upstream 8745 13821748 ~ 13823540 (-) True G61927
TU77551 lncRNA upstream 11686 13824689 ~ 13828265 (-) False AMCG00020249
TU77567 lncRNA upstream 100169 13913172 ~ 13914166 (-) True G61943
TU77717 lncRNA upstream 532294 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 540487 14353490 ~ 14401302 (-) True G62066
AMCG00020252 mRNA downstream 3665 13806755 ~ 13808306 (-) False AMCG00020252
AMCG00020248 mRNA downstream 7650 13800593 ~ 13804321 (-) True AMCG00020248
AMCG00020253 mRNA downstream 14698 13793197 ~ 13797273 (-) True AMCG00020253
AMCG00020234 mRNA downstream 44788 13760414 ~ 13767183 (-) True AMCG00020234
AMCG00020239 mRNA downstream 66538 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020250 mRNA upstream 1219 13814222 ~ 13820396 (-) True AMCG00020250
AMCG00020249 mRNA upstream 13025 13826028 ~ 13834729 (-) True AMCG00020249
AMCG00020258 mRNA upstream 24799 13837802 ~ 13838218 (-) True AMCG00020258
AMCG00020257 mRNA upstream 35341 13848344 ~ 13849084 (-) True AMCG00020257
AMCG00020254 mRNA upstream 37327 13850330 ~ 13852469 (-) True AMCG00020254
TU77536 other downstream 3638 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 3638 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 146386 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 215054 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 587461 13221600 ~ 13224510 (-) True AMCG00020212
TU77648 other upstream 316675 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 517519 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2285897 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 2285897 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 2305986 16118989 ~ 16120153 (-) True G62409

Expression Profile