RNA id: AMCG00020263


Basic Information

Item Value
RNA id AMCG00020263
length 5651
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00020263
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14000227 ~ 14022327 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTCCCTCGCAATGTTGTTGGTGGCGGCAGTCAGTGCGGCTGTGCCTGACCTTACTGGGACTGAAGCATCTCTGCCCGACTTGGCTCTCGGTGCCGCCGGCGCTTCTGCTGCATCTGTCGGAGGTCGGCATGGGGACCACTCTCTCACCGGGACTCCTGCATCTGCCGGAGGTCAACATGGGGACCACTCTCTCACCGGGACTCCGGCTTTCCACACAGAAGGCGACACCTTTGACGAACCGACCGAAAAACAAAGCCAGTTTGAAATAGTGAAATGGGAATGGACGTACGTGCAGGGACCGTACCTTATAGTGATCTGGATCATGGTGGCCAGTCTGGCCAAAATACTGTTCCACCTGTCCAACAGCGTGACTCGCCTGGTGCCGGAGAGCTGCCTGCTCATCCTGCTGGGCCTGGGGCTGGGCGGCATCGTGCTGGCCGCCACCAACAAGCCTGAGTACCACCTGCACCCTGAgcattttttcctctttctgctGCCACCCATTGTCCTGGACTCTGGCTATTTCATGCCCAGCCGACTCTTCTTCGACAATCTGGGGGCCATCCTGATGTACGCGGTGGTCGGCACACTGTGGAACTCCTTCGCTACGGGACTCTGCCTCTGGGGCGTCAAGACAGCAGGGCTGATCGATGGCAGCGTGCAGGCCGGGCTGATGGACTTCCTGCTGTTCGGGAGCCTGGTGTCGGCTGTGGACCCAGTGGCCGTGCTGGCGGTGTTCGAGGAGGTGCACGTGAACGAGACACTCTTCATTATCGTGTTCGGGGAGTCTCTGCTGAACGATGCCGTCACCGTGGTTTTGTACAAGGTCTTCAACTCTTTTGTGGAGATGGGAGCAGAAAATGTGCGGCCTGTGGACTATGTGAAAGGAGTTGCCTCCTTTCTGGTGGTGAGTCTCGGAGGCACAGTGATTGGCCTGGTCTTTGCGTTTCTCCTGGCTTTCATCACGCGCTTCACCAAAAGGGTGCGCATCATCGAGCCGCTGTTTGTGTTCCTGCTGGTGTACCTGGCTTACCTGACAGCCGAGATGGTATCGCTGTCCTCCATCCTGGCGATGACGTTCTGTGGGCTGTGCTGTAAGAAGTATGTGGAGGCCAACATCTCTCAGAAGTCACGCACCACTGTAAAGTACACCATGAAAACCCTGGCTGGCATCTCCGAGACCATCATTTTCATCTTCCTTGGCATCTCTGCTGTGGACCGCTCCAAGTGGGCCTGGGACACGGGCCTGGTGCTGTCCACTCTGATCTTCATCTTCGTCTTCAGAGCTGTAGGTGTTATTTTCCAGACATGGGTGTTGAACCAGTTCCGGCTGTCCCCACTGGACAGGATTGACCAGGTGGTGATGTCATATGGTGGGCTGAGAGGAGCGGTGGCCTTTGCGCTGGTTAGTCTGCTCAACAAAACCAAGGTGAAGGCGAAGGACTACTTTGTGGCAACAACCATTATTGTGGTATTCTTCACCGTGATTTTTCAGGGCCTGACCATTAAGCCGCTGGTGAAATGGCTGAAAGTGAAGCGCAGCGACCAGCACAAGCCCACGCTGAATGAGGAGATACATGAGAGGGCCTTCGATCACACCCTGGCTGCAGTGGAGGATATCGCCGGTCTCCATGGTTACCATCACTGGAGAGACAAGTGGGAACACTTTGACAAGCAGTACCTGAGCCAGGTGCTCATGAGGAAATCTGCTTATCGAATCAAAGATGAAATCTGGGACGTGTATCAGAAACTCAACATCCGGGATGCCATCAGCTTTGTGGATCAGGGAGGCCACGTCATGTCGTCTGCCAGGATGTCCCTGCCCTCCATGCCCAGCCGCACGTCCTTCTCTGAGAACTCTGTCACAAACCTGCTGCGTGAGAATGGCAGCGGGGTGTGTCTGGACCTGCAGGTGATTGACACAGTGCGCAGTGTGCGAGACCGCGAGGATACGGCCATGCACCACGTCCTGACTGGGAACCTGTACAAGCCTCGACGCAGGtacCTGGCCCACTACAGTCGGCACTTCCTGGGCGTGGGGCAGCAGGAGCGGCAGGACCGCGAGGTGTTCCAGAGGAACATGCGCCGCCGCCTGGAGTCCTTCAAGTCCACCAAACACCCGGCCTACCAGGGCAAGACCAAGCCCCGGCACAGGAAGGAGCAGCGCACCCAGAGGAAGGCAGGTTCCCACTCGTCCCGACGACCTGAGAGCTCACGGTGCTGTGTGCACAGGTGCACAGAGGCAGCCGATCAGGTTCCTAATGGCAAACCCAGGAGAAACGTCAGCTGGCAGGACACGGCTCCAGTAGTGGTGACAGTGGACTCTGAGGAGGAGGACAATGATAACTctgagacggagagagaggatGAGGGCATCACCTTCGTGGCCAGGGCGGCAGACGAGGTACTGCATGAGGACCAACCCGCAGGAAACCTGGATGTGTGTCCAAGCCCTTTCCTACTCCCACCCTCCCCAACCTGTGCTGAGAAGCAGCTGCCGTGGAAAGGGGACCAAGGCGGTCTGCCGGTGTGCGTCTCCCTGGAGACCACCAAGATCGTGCCTGTTGACCTGCAGGAGGCCTGGAGCCAGAGCATGTCCTCCCAGGAGAGCCTGTCGTCACCCGCCTTGCCACAGCCGCTGTACCCACGCAGGACACCCCTGTCCTGGGCAGAGCAGAGCGGCTCCCCGGTGACCCGACTTGCACAGGCCTGCCGCTTTCAGTTCCCTGAGCGgcatgaggaagaggagggcaGCCGGACGCTGCAGCAGCAGGAGATGCAACCGCTCATGTCAACGGGGAGACCACCTAGGCCGGGACCCCCTCAGGGTGGTGCTGCAGGCAGGTGGCCCTCGTCCTTCACCCGGGCACCGCACAGCTCCCTGCTGAGGAGCCTGGTGCCCCCCCCGCCTGCAGCCAGCCAGCCGCGCAGCAGGAAACCAACCCAGCTGTAGCCACCGCGCCCACGTCACTCGCTAATCCTGGTCAGTGCCCACTGGAGACATCCCCCAGAGATGACACGAATGTAGCATCTTAACACAGAGCAGGAATGCTCTGTTATTCACCGACGCAACTCTGTTACTCATTCGTTCATTCACTTGTTCTGTGAGCAGGGGGGTTGCGTAGTTAATGctcaaaaatatgaatgtgtccTTTCTGTTTCACTGACAGCATACATTAACCACGagtaaattaaactgttttcttttaatatgattatataATGATATGATTATCACActatttcatattgtattttaaaatagccATGAATGTAACCATACATTGGGGAGTAATGGAAGCTTTGAGTGTTTCTGTAGCACAAGATACTGCAAAATCAAGACCGTATTAAGTTCTGTAATTATGACACTATTGCTAAAGCAAAATTAATGTAGGAAATAGACAacgattgttttaaaaatgtgcagagAGTATTTGATTTGATGCAAAGTTAATTGGAATCTAAAATAACTGCAGCAAGGTTCTGCAGATGTAAATGTACAGAGAGTACTGCTGTAACATTCGCTTTTCATCATCGGAGGAGTCTTCAACTGTCACGAATGGAACTCCTGCAGCTGTCCGTCCGTCCAGACCAGTCTTCGCACCTCCGGCACTGATGCCACGATACATATGAAGCCATTGATTTTGTAAAGCGGCCTTTCAGCCATTGCAGTGCCTGACTATCTGTGTTATGGTGCCAATCCTGTTTACAAGATTGTCATTGAAATGATCTTAATTACTTGCGTTTTCcaccaatacaaaacaaagaatacaaaaaaagtaaaagctaGGAGTTCTAACACCATCTACTTGCTTTactccttttcttttaaattcatCATACATGGGACCTGTCCAGCacttgtaaatgtttttgaaagtgtATAAACTTGATAACTGAGAACCATATAGCTAAAGCATGACCtaaaatatgttaatagatacagttgtaaacaaaataaaaaaataaggagTAGTGCAATATTTAAAGGCAGAGTGGTTGTGATGCTCAGTGTCCAAACACAAGGAGAGCCTTTGAAATGTAGAAGGCTCTTCTCCCTCCCGGTGCACAGGTTAGCAGGTTAGCAGGCCAGAGGGCTCGGATAGGCTCCCTCCACCTGTCTCCAGGGGGATTCTCCACATTTATGTGCAAATGTGCCATTTTGTGCAAAGTACCTTTTGTAGTATGAGCCAGTACTGCTGCTGAGCAATCAGGCATGTGTTaattagagagagagtgttttcAGAGCAGGAGGTTTGGACCTCCTCCTGGCACACAGCAGAGACATGACTGTCTATGAATGTGAATTTCAACAGCATTTGTCTGGTGCAGTTTGGTTGAAGATATGGATTTCTATGAATGTATTTCCCTGCATTGCCAGTTTCAGTGCAGTctacattgtgtgtaatttgtattatttttctgaattaGACATTTTATTGAGGCTTGTTTTGCATGCCatacattgtgtaatttccAGTATTCCATCCAGTGGTGTGGtggtaaaaaataatagtagtgTTAATGTAATAAGAAATATTACAGCACTGCTCAAAATATGTAAACTATGATTATGTACAAGTCCctttaatttttattgtttgttgagCTCCTTAGACATGGAGGTGACATTTATGGTCTTTTCTTGCAGGCTTTTGTTATCCTATTGATTGAAAACCATTTTTcactgtaacatttattttgattattttacctttatttattttttaacaaacaccTACTGCTGGTATATGTGGACTTCTATAATTCtcgatttttaattttatttttgtaatttgcccATGTTCAgaattattgtgattttttttattttaaggaatcttttctgtattgttttcattcaaagGGTCTTTGCTTTGTCTATTTGCAGTATAATTCATTCTTATAATAATATGGTTGTGGGTAAAAAGGGAATGCTTCACTTATATTTAACAAATTGtctcatttaatatatattctacaaATATCTAAATACACCTGTAATTACTTCCCTGGATACTTCTTAATTAATGGGGGTTGATTCATGATGTCTGTTTGACCGTTATATTACAGTGATGCTGCAATAGAAGTGGCTCCTCGGGATATACAGTGTATGgtacactgtaaaataataaaaaaaggacttTGCATGTAATATATGTGCATGATGTTGTCCTAGGTAGTGTGTTTGAGTACATCAATTATAACGATGAAGTATTACaaacataatattatttaaacatctaATTATTGTGAGCATCCTGGAGGTTAAAAGTACACTACACCACTGGGTTAATCaaatttatgattttgtttttgtagatcAAATCAATTTTGGCAATAAATATAGTgcatttaatcaatgtaaaGAAACAGTTAATGGATAAGTGGTATATGCTCTATCTGAACTTAAATTAGGTCTAGATTTTTCAGATGGTCTCTTTaaggtatttttatattttgaagtcACAAACGTTTCTTACAATAAAAGTGATCAAAAAGAGGTCTGCGTGTATTTGACATTACTTTAATATtacctttctttttattcttaaGGGTTGCTTGCTTACAATGTGTGTAATGTggaatattgtatttcaaagaTCAGAGCAGAAGAGaaatattttgtacaaaaaaaaataaaaa

Function

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0015299 solute molecular_function

KEGG:

id description
K14723 SLC9A5, NHE5; solute carrier family 9 (sodium/hydrogen exchanger), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77505 lncRNA upstream 69487 13877311 ~ 13930740 (+) True G61904
TU77495 lncRNA upstream 109799 13888151 ~ 13890428 (+) True G61895
TU77507 lncRNA upstream 115111 13882825 ~ 13885116 (+) True AMCG00020241
TU77473 lncRNA upstream 207283 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 248864 13751087 ~ 13751363 (+) True G61871
TU77649 lncRNA downstream 112971 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 114093 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 115099 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 173457 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 219538 14241865 ~ 14288834 (+) True G62039
AMCG00020264 mRNA upstream 5088 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020262 mRNA upstream 24668 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020265 mRNA upstream 44160 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020267 mRNA upstream 50244 13949642 ~ 13949983 (+) False AMCG00020267
AMCG00020260 mRNA upstream 55474 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020266 mRNA downstream 30031 14052358 ~ 14055730 (+) True AMCG00020266
AMCG00020268 mRNA downstream 62806 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020273 mRNA downstream 183880 14206207 ~ 14232268 (+) True AMCG00020273
AMCG00020271 mRNA downstream 235245 14257572 ~ 14259160 (+) True AMCG00020271
AMCG00020272 mRNA downstream 239655 14261982 ~ 14272204 (+) True AMCG00020272
TU77582 other upstream 49180 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 133664 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 165395 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 649515 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1380410 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 445473 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2792047 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3436833 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3906001 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 4036231 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile