RNA id: AMCG00020264


Basic Information

Item Value
RNA id AMCG00020264
length 4129
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00020264
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13988080 ~ 13995139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTTTAGTTTCCTTATGGAGGTTTATATTATAGAAGCAAatgtacttttttccccctttgcttCAGGTGGCAGCACCCAGCGTCAGAGCAACCTGGAGCAGCACAGCACCCTCTCCAGTGACAGGAAGTTCATGCTGGACATCCTGTACTCCAAACACAACGCCGACCCTATGAGGACTCCTGGCAGAGAGGCCAAGAGCAGCGAGAGTGAAGAGGAGGACAGGGAGGAGGACAGTCCCACGGAGGGCGGGCCCCTGCCCCCTGGCGTAGACAGTCTGGCCAGCCGAATCTCTGGGCTGGAGCGGAGGCCGCGGTGTGCAGAAGACGACGGCCGCAAGGGCGAGCTGGAGGGGCTGGGGGCCGGCGCACGGGCGTCCAGGGAGCGGCTGGCAGAGGAGCGGCTGGCTGAGGAGCAGCAGCCCAAGAAGTTGCGGGCTCAGTACAGCATCGACGCCGAGCTGCACTCCAGGAGCCTGGAGAAGACTCTGATGACTCCGCTGGCCAGGGGTGAGGGGGCATGGGAGCGGCCGCAGCCCAGCTCCAGGGCACTCCGGATCAAAGACCTGGACTTCTCTGacctgctggaggaggaggacatTGACGTGCTGGACATGGACAGCTTTGACACCCACCTGCCCAACGGCACTGCACCGCCTCCACCCCCCCTGCCCAGTGGCCCTGgggcccccccgcccccaccccccctgcccAGTGGATATGGTACCctcccacctccacctccccctccacctcccccgGGGGATCCTGGCATGTGCCCtccgcccccgcccccgccaCCCCCTCCCGGACTGCCGCCACCCCCACCTCAGCCAGTAGAATCTGCCTTTGCCAAGAAGAGGAAAACTGTGAAGCTGTTCTGGAAGGAGCTCAAGCAGCCAGACAGCCCCAGGAAGTGCAAGTTTGGCCGTGGCACTGTGTGGGCCTCCTTGGACAAAGTGACTGTGGACACGGCCAAGCTGGAGCACCTATTTGAGTCTAAAGCCAAAGAACTCCCAGCTGCAAAGAAAGGACCTGAAGGGAAAAAGTCGGAGATCCTAGTGCTGGATCCTAAGAGAAGTAATGCAATTAACATCGGGATGACAGTGCTGCCCCCAATACACATCATTAAGACTGCTATTCTCAACTTTGACGAATTTGCAATAAACAAGGAAGGCATCGAGAAAATCCTGACGATGACGCCCACCGAGGAGGAGAAACAGAAGATCCAGGAGGCACAATTGCACAATCCGGACCTTCCACTGGGGACGGCCGAACAGTTCCTGCTCACACTGTCTTCGGTCAGTGGGCTGACTGCCAGGCTGCAGCTCTGGGCCTTCAAGCTGAACTATGAAGCCCTGGAGAAGgAGATTGCAGAGCCGCTGTTTGATCTGAAACTCGGCATGGAGCAGCTGGCtaagaacaaaacattcaaaCGAATCCTAGCAACACTGCTGGCCATTGGGAACTTCCTTAACAGTTCCAGCGCAAAGGGTTTTGAGCTGAATTACCTGGAGAAGGTGACGGAAGTGAAAGACACCGTGCACAGGCAGTCCCTCCTGCACCACACCTGTAACTTTGTGGTGGAGAATCACCCAGACACCTCTGATGTGTACTCTGAAATTCCAGCCATCACACGTTCTGCTAAAGTGGATTTCGATCAGCTGTCAGAGAATCTGGTGCAGCTGGAGAGGAAGTGCAAGGCATCATGGGATAACCTGAAGGTCATCGCCAAACACGAGACGAAGCTACTGCTGAAGAACAAGATGACAGAGTTCCTGAAGGACTGCACAGAGAGGATCATCATCCTGAAAGTCGTGCACAGGCGCATCATCAACAGGTTTCACTCGTTCCTGTTGTACCTGGGGCAGCCCTCCTACTCTGTGCGGGAAATGAAGGTCACGCAGTTCTGCAGGATCATCAGTGAGTTTGCGCTGGAGTACCGAACCACCAGGGACCGGGTGCTGCAGCAGAAACTTAAGCGAGCTGCCCATCGTGAGAGGACCAAAACGCGTGGCAAGATGATCACTGAGACGGAGAAGTTCTCAGGTGCAGCCAACCTTCCACCGGACAGTGTTGCTCCCGTGTCCGTGGCAGCAGAGCCAGAACATGCAGACGAGGACCACGAGAACATGAAGAACCTGCTGGTGACCAGCAGCAACAGTGACAACAGCGGCGTGCGGCGGAGCCGAGCTGGGCGCAGTTTAGGGAGGGTAAGCCCATCCCCCGTGGTGTCGGCGAAGGAGGACAGTGCGAGTTCCCAGGATGATCCAACTGATGAAATCATGGATCGCTTAGTCAAGTCTGTTACGCAAAACCCCAACGAAAGGCCTGCAACTCCGAAAACACGCAGACGTTCGCGAGCCAACAGGAAGTCCTtaCGGAGGACCCTGAAGAGTGGGCTGACCCCGGACCTAGTACAGGCCCTGGGGTTCAGCAAAACTAATGAGGAGCTGTGACCTGTGCTGCCCAGAGGACACAGCTCGCCAGACGCACAGCCGGGCTCGGACCCAGACACGCCGTGCAGAGCAGAATGAAATGCGATCAGATACTGAGCAGTCTCAGGGGACTGAGCTTTGGAGGACTTCAAGTGCTGTACAGAACCTGCCAGGAGCATGATGGGAAAACGGCATGGGCATAAGACAGAAGTATTTTTAGGTGCTAAAACTGtatcattaaaaacagaaagtgagCTTTTTTCTGTCACTTGCCAAATTGCATCTAAACATTGTATGTAACAAGCACAAGATATGCCTTAAGCCATCgatattttgaataattataaattTGGTGTTATAATTGGAGgtaattgtttactgtatatgtaatttaaaaacaccttAGTTACTAAGCTACTTTgtaagtaatacattttctgaatatttgtataaatctACAAATTTGTTTAAGGATGTATACTGAACTCATCTATTTCTATGTTTTTTCATACTGCTGGTATTAAATAGACATAGTTCTCAGGAACCTGGTTCAGTTACTGGGATTATTAAACCTCTGTTAAACAGACTGTCTTTTTTACAGTATAACCAGTTTCATACTACTTACAGTAAGATTCAGTATGTCAGGTTGATCTTCTGACTCGCTTCACACTGATCTTGAAGGAGAGCCCATAAACCAGATCATCTTTAGAcgtttcaatgtatttttttccactatGTTTGtcctttcaaaaaaaaaaaaatatatatatgtttcacaATCTTACAGTTTGGTGTTCTGTCATCTCCTGAATGATATTTGAATTcacaatttattaaataatctaGTTTCCTCACTTTGAGGGGTTGCTGTATTCTCACAGAACATCAGCAGGAGGTGAGGTTGTGGGATAAGAGGGAGATACAGCCTTTCTCCACCAGTACCTATGGGACAGACACCTTCAATGGAAACTAGTAGTCTAAAGTTGGTTAATCTGATCAAATTTCGAAAGCGTTTTTTAACACTAGTCAGTTGAACCCACGGCGACCCTGGGTCGAAATTCAAGcgctttcacattgtcattttcaacaGAGACAAAACTGAAGCCAGGTGAATTCGCCCCTGCTAAAGACTGAGGATGAGATTTCCAACCCAGGACAAAGCACTCACCCTGGGTTGGAAAATGTTAATGTGAATCATAACCCATGTATTGTAGAGCAAGGCAAAATGTCCACTCAACCTGGGATTAGATGGTGTAGTGTGAAAATGGGATGAATTGTGGAATGCAGAATGAGTGGATAGTTATATTGGACTGAAAGCAATAGTTAGTTTGCTGTTTAAAACTGCTTCAACCAAGGAACTGCATAAATGTGCAAAATGCTGAGGGCATGGGTTTAATATATTCAAAGCACACACATTGTGAATGAATCAGTATAAACAGCCATATTGTGGATCTCTTTGCACTAGGATTCTTAAGCATACTAATATTAGGTTGTCATGTTATTCTCATAATGTGTATACCAAACTCCAATATACAgttgttccttttgtttttaatgcatctgTAATTGACTTTTCAATTAGACTGTTCAAATGTAAACACACTGTGTTGGAGGCATTTGATCAGaagtattgtttgtatttcacatattttgtaatattgtaaccaattaaaaatatatttgtttttaa

Function

GO: NA

KEGG:

id description
K23939 FHOD3, FHOS2; FH1/FH2 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77505 lncRNA upstream 57340 13877311 ~ 13930740 (+) True G61904
TU77495 lncRNA upstream 97652 13888151 ~ 13890428 (+) True G61895
TU77507 lncRNA upstream 102964 13882825 ~ 13885116 (+) True AMCG00020241
TU77473 lncRNA upstream 195136 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 236717 13751087 ~ 13751363 (+) True G61871
TU77649 lncRNA downstream 140159 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 141281 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 142287 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 200645 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 246726 14241865 ~ 14288834 (+) True G62039
AMCG00020262 mRNA upstream 12521 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020265 mRNA upstream 32013 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020267 mRNA upstream 38097 13949642 ~ 13949983 (+) False AMCG00020267
AMCG00020260 mRNA upstream 43327 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020259 mRNA upstream 76565 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020263 mRNA downstream 5088 14000227 ~ 14022327 (+) True AMCG00020263
AMCG00020266 mRNA downstream 57219 14052358 ~ 14055730 (+) True AMCG00020266
AMCG00020268 mRNA downstream 89994 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020273 mRNA downstream 211068 14206207 ~ 14232268 (+) True AMCG00020273
AMCG00020271 mRNA downstream 262433 14257572 ~ 14259160 (+) True AMCG00020271
TU77582 other upstream 37033 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 121517 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 153248 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 637368 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1368263 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 472661 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2819235 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3464021 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3933189 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 4063419 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile