RNA id: TU77582


Basic Information

Item Value
RNA id TU77582
length 1520
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00020267
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13948426 ~ 13951047 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCCACAGCacctcacacacagagacaacatCTGCACAGCTGCGGGTCCGAGGACAGCCAGACAGAGagctgttaATTGAGAGTGCTGCACGTACTTCCCTGCCTGACTGGACATGGATGAGTGTGAGAAGTGTGTTCCCAGGAGAGATCCGGAGCACACAGGCTCTCCCCGGGTCCAATGTGCCGGGATCTGGGTGAAGAGGTTCCTGCAGTCACTCCACGGGAAGCGGAGCCAGGACTCTGAGGTGGGGCAGGCTGATCCCACAGTGACCTCGGTGCTTTCCTGGCAGCACTTCCTCTTAGCGCTTCTCATCCTGCTGGCGCTGGGCGTGATGGTGCTGATCCTCTTCTGGAATTACCAGTGCATCGTGGTCCAGCGGCTGTGTCAGGCTCAGGAGGAGCGCTCCCCGTTCCCTGTGTTCGGGAAAACGCAGAGCTCAGAGCAGAGCGATTAGGCCGAGCGATGGCCACAACAGACTGAGTGCGGAGAGCAGAACTGTGTTCAACGGCCCTGGGCTGAGCACAGATTCGAAAGCACTGATACCATGCATTTTCATTAAACCAGAACTGAAACGACACATTTTCCCTAATCATGCCTTCCCGGTTGAACAGCCACGGTGAATGTATCCGGGAGTGAAAATCCCAATCCTTCTGGGTTCTCCTGTGGCTTTAGTGCAGCTGTAACTGATTCTAAGTTTGATTGTATGAAAAGCTAATCATGGTAGCTTTGCTTTAAAGCACTATGTTAAGTATAATGGTACAATTccattattgttacattttattctcacaggaaaggaaaaatgtTTGATAGCATAAGGAAAGTATACACTTCTTATATGGTACCACTAGTGGATAAACTAATAATGTCCTAtgatgtatatacagtatgtagtATTAAGTGtctatgttaaatgtataaaaggtgTTCAAACAGGTTAGTTTCAGTCTTCTGAACACATGAGTTTATTTTCTGCCCTGCGAATCTctgcatttaaaactttttcatGTGTATATTACTCTGGTGTGCAGTAAAGATTGTTTTCTGCTCTTATGGCAGAATTGTTCAACACATTTTCCTTCTGCTCTGCTTATTGATTCTATGAGGTGTGACCGTTATTCCAGTTAAATGCACAGTTGGGAGTGATGTGCCATCTTTATAAACCAACTAAAGCATACCCGTCTGTCTTAATATAAAACCCTCTCACACTGGAGAAAGAAGGGAGGAGATAGAGGACGTACCTGTAACACCCCAACATCACACATCCCTGTTTACAGCTAATCTAACCCTTCCCTGCCTTCTCTCTCAGGGAGGTCTCAGTGCTGCACAGTGCCCAAGCTCAGCACCATCTACAACTCTCCCCTATCCCTAGCCCTCATACCCCAGGCCTGTCAGAGTTGGGTGCAACTGTGCCCTCACAGTTGTCCCCAATCTCCCAAGACCAGGCTGCCAAGTATGTTTCACCTTCCCCTCAGGGTGGCAGCACTTGATGTTGTCCCAGAGAGGggaatcatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77505 lncRNA upstream 17686 13877311 ~ 13930740 (+) True G61904
TU77495 lncRNA upstream 57998 13888151 ~ 13890428 (+) True G61895
TU77507 lncRNA upstream 63310 13882825 ~ 13885116 (+) True AMCG00020241
TU77473 lncRNA upstream 155482 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 197063 13751087 ~ 13751363 (+) True G61871
TU77649 lncRNA downstream 184251 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 185373 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 186379 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 244737 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 290818 14241865 ~ 14288834 (+) True G62039
AMCG00020260 mRNA upstream 3673 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020259 mRNA upstream 36911 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020241 mRNA upstream 63821 13884088 ~ 13884605 (+) False AMCG00020241
AMCG00020246 mRNA upstream 71200 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020244 mRNA upstream 74127 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020265 mRNA downstream 3440 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020262 mRNA downstream 22367 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020264 mRNA downstream 37033 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020263 mRNA downstream 49180 14000227 ~ 14022327 (+) True AMCG00020263
AMCG00020266 mRNA downstream 101311 14052358 ~ 14055730 (+) True AMCG00020266
TU77503 other upstream 81863 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 113594 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 597714 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1328609 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1410674 12519764 ~ 12537752 (+) True AMCG00020177
TU77751 other downstream 516753 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2863327 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3508113 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3977281 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 4107511 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile