RNA id: AMCG00020269



Basic Information


Item Value
RNA id AMCG00020269
length 6339
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00020269
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14148574 ~ 14169641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGACAGGGCCGCGGATGGGAGCTGCAGTCTGAGGCCGGACGCGGCGGAGGCGCGGGCTGCGTGATGAGAGGGGAACCAGTGTGTCTTTGACATGTGTGTCTGCGGGAGTCGAAAGGACGCACCGGAGACAGGGGAGCCCTGAGCGTTTCATCTCGTATAATCGGAGTTTGATTTCGGATTTTATtgagcagcaacaacaacaacgcaGGCGCCGCGTCCTTTGGGAGGCTGagatattaataaacaacacGCCGATGTTTTTCCGAGACTGCTGTGTTGTCCGAGCAGATTATTTATCAAACGTACACATCTGAttggtttttaatatatagccTGCATAGCCAGTATATCCACGAAGAGGAAATGCAGTTGCATTGTTGTGGTCTTAGTAACTAGGGACGCCCTGTTTAATTCAGTCACAACAGTAAGTGTGTGCCGCCCGCATCCGCCACGACCGCCAAGCAAGAGGAGAGACATCGTTTTACTAACATTTTCTCCGTGGGCACATTGGCTGGGGTTCACCGGGATGAGTTAAGATTCACTGTGTGTTATGAAAAGACGTCCAATGTcatgatttaaaacataataataacgcAATAAAATATACCTCTTATATAGCAACTAGGACAGCATTTAGGATGCTGAGAGGTCTTCAGTGTTTGTCGTGGACAGCCCGCCCCCCGGCCCGGCTCAGAGAGCATGCTTTCCTAGGCTAGGACATGCAGAAGACAGGCTCTTTTGAAAAGTTAAGGGAGATCAGCGGTAGTTAAGGGCAGCGGAGTGGACCGGGACAGAGACGGGGTGGATGTGAGGAAGAAAGGACTCGGGCAGTGGAAAGAGCAGAGGTCGGTTCTGGTCGGTGTGCCTCTGAGATGTCTTGGACCGGGATGCGCTTTCTGCCCACACCTCCGCCAATACAGCACCCAGCGCATTGAAAGATGAATGTCTGCAACAAGAACCCCAACCGCACGGCCCCCGAGAAGGAGGATGGCCCCTCACGGCCGGAGCTCCCCCAGTGCTCACGCACCAACGGCTGGAGTtggcccccccaccccttccagCTGCTGGCCTGGCTGCTCTACCTCTACTTCGCCGTCATTGGCTTCGGCATCTTTGTCCCCCTGCTGCCTTCGCACTGGATCCCTGCCGGCTATATTTGTACTGGCgtgatgtttgtttgtcatcTCTGTGTCCATCTGACGGCCGTCTCCATTGACCCCGCTGATCGCAACGTTCGAGCGAAGAGCTACCGAGGCCCCGTGCCAGCCTTTGATCGCAGCAAGCACGCCCACGTCATCGAGAACTGCCACTGCTACCTCTGTGAGGTGGATGTGAGTCCTAAATCCAAGCACTGCAGTGCCTGTAACAAGTGTGTTGCCAGTTTCGATCATCACTGTAGATGGCTGAACAACTGCGTGGGCAGCAGGAATTATTGGCTGTTCCTGAACAGTGTGATCTCCGCTCTGCTCGGGATCTGCCTGGTTGTCATCATCGCCTTCTATGTGTTCATCGAGTTTTTCCTGGATCCGTCTCAGCTCCGCTCTGACAAACACTTTCAAGTGCGCAACGAGTCGGTGGTGTGGTTCGTGTTCCTGCCTGTGGCCCCGGTGTCCACCACCGGCCCTGCCATCCCTGCCCTGGCAGCGGTCACCATCGCCCTGGGGCTGCTGTCCATCGTGCTGCTTGGACACCTGCTCTGCTTCCACATCTACCTTATGTGGAACAGGCTCAGTACATACGAGTACATCGTCCGCCAACGCCACCGGCAGGAGGCCAGGGACTCTGACAGAGAGCAGCAGGGGAATGAGTCTGTGCCTCCGAAAATGAAGCCCATCAAGGACGTGGGTTACTCAGGGACACTGGGATACACCAATCCTGAGATTGAAGTGGAAGATCCTGCAACAATGCTCTCCACAGGAAAAGAtTTCTCACTGGTTGTTGTCTGTGGGCAATGCAGGTTCTACGGGAATGGTGTTCTGAGCTCTGGCAGCAGGAGGGTGGAGGAGGACCTTGTTCCCACCATGTCCACCGAGCCACAGTTGCCCACCcggccacacagacacacacagaagaagaaaaagaaagtgcacAAAGTACCAGCAGAAGTGACCAATGACCGATCCCTGGAACACAGTGCCAGCAAGATGCCAGCAGTGCCCCCATCAGAGCCGGACCACTGTGTTGGTGCTGCTACTATGGTTGCCTCCCTGAGTCAGCGGCTCCCCTTCCCAGCATTTCCCCTGCGTATGGCGCTGCCCCCCCTGGCACCGGTGCAGGCGGCTGGCCTCCCTGCTGAGTATCACTCTGACTCCGCAGAGTCCCTGGAGGAGATCCCCGTGGCCCAGGCTCGGCTGGGCAGTGCAGCCATGGCCGGCTATAGCGCCCGCAGAGACACTGGGGCCGCCTCCTCGGCTCAGCCACCAGCCCCTGGCCAtctgctgcagcccctgccCTCCCCGTTGCCCAGGACCAAGAGGAGGGGATCCCGCCGGACTCCGACTGAAGAGCAGAGGTTCGAGCTGCAGCCCCAACCACCCAGCGTGTTCGTGAGCAGGAGCAGTGGCGTGCCTGACCTGGGAAGAGGCCCAGAGGCCCCTGACACTGCGGGGAAACTGAAGCGCAGCAGCAGGAGAGGCCCCAGCGATTCCAGCCCCAGGACGCTGCCTTAGCATGGCCTGCCGGACCCAGCTCTGTGGCCCTCACTTCCCACGCACCCACCTGTGCCCCTGGGTAGCAGCCCCCCCTCACACAGCAGCTGGGCTGTCAGGAAACTTCAGAGAGTTCAGCTATAACACTCTTCCCCAGATGCAGAACTCGCTCTGTCTGCAGCAGCCTATGCAAACACTGAGAAACTGGGCGGGTGTTGGAGTGAATCTCTGAACGACACTGTGGACTACGTGTTTCTCCAGGTGAAAGGAATCTCATCAGCTCTACGTTCTTCCGTATGGCAGCATGCTGCTGAAACACTAATTCAGCCACTGATACAGTGACCTGACTTTTAATTTGGTTGTCTTACTCTTTTCCTTACTGTATCTTTAACCTGCCATAGTAGCATATTACCAAGACAATATTTTTCctagtaaatattttatttaattatgtacttttttatgatttatttatatgcgTCCAATGCCAAAGGTTATATACTGTGTGGAAACTTACGATTCttgatttatatgaaatattcatattcagcTCAGTTCAGAAGGGTAGTGTCTCCTGCAATACAAAACAAGTTACCTGAAAccttaatttaatcattttgagtgtgtgtgtgtttttctctagCAATCTATGAAAATTACTTTCTAAAGGGGCTGTGCCCTAAAATAGCTCTGTGCGGATGCTCTGTCCCTGCAGTCTTGTAGCGGCCGGTGGGTGTGTGCTGTGGGTGTGGTAGGCAGTGCCCTCTGACAACTGACACACAGCTCACGGGACACTACTTCCCAGTGCTGCTGTACTATCTGTGTCTCTTGCTGCacagactattattattaatatatgcgGCTGACACTTTTATCTACAGTAAATTACCTATATTAGATCATTAGGACATTGTAAGAAAGTGAAGAAGCTaactttgtttgcttgtttgttttagccCATGCCTGTTTGTGATATTGTGACCTTCCAGTGGTCTGAGTATAGACACTATAGTATAGGGACTATATCAAGCTTTGGCCTGTTTGTGTAGCAGAACTTCTACCTCTCTGGTCCAGTCCGCACatctggggccggttgcataaacatagactaagtctttgccatagtataattataaatcatactaatgatagacactcagttaaaaccgttgcataaaacagtctttacttagactggtcttagtcaataatgcaatgcattctgggtatTTTAAGACCATTTTTAGGACAGACAAAAACATGGCGGACGCTCTCTAAAACAGTAACGATCCCAGTTATCTTAAAATCTGTTAGTTATTTAACTATACTAtagaaaaattatataattttgggGATATTTTCTGAATCTTCTGAAACGCATTCAAACGCAAGGTGTGGGATAACATCACTAAAAAGACAACAGCGACAATccgcattgtgtgtgtgttagaagaatatgctaatttaagaggaaacatcagTGTACTGGAGGAGGACCTCTCTAAAACTAAAACGCAGTacagagttattattatttatttattggcagatgcccttatccagagtgacttacaggatacaagagcaaaacaaaagtgcaaaaatacagtacaaaatttcaaatcaggcataatacatattacagtttcaaaattaCTAAAGTGGATAGGTAAAATGTAGCCTACAGCTGGTGATTGAAATCTTTGGGGAGGAGTCTCGATGCTGGGGGATTGCTGGTGGGTGGGAGAGCGGAGTGTGTGAGAGCCAGTGATTTCAAGGGGAAGATCAACTTAAATTCTAAGTTAGCCTAGGGGTGAGGAGGCTACCTTAAGTcttaatcttattttttatgcaaataACTAACTTGCATTAGACTACTCTGTCAAATTAAGTTGCATAAAAtttagttttatgcaaccgggCCCTGCTCTCATTCTGCGCTCACAGGCTGCAGCTGGAAAGTCTTTTCAGAGCAGTTGGTTTCTTTgcttggtttctttttaaaattatttttatgaaacacaagttttctgtgtgtataaTGCATAATTCCAGAGGATTGAGATATGGACAGGTGTGTGTCTGACCTTGTTACAGTAAGCAGAAAAACCTGAAGGCCAAGTGACTGGTATTGAAATTACTGTGTGAATACTTTTGGGAAAAAGGATTTGGAGATTCATGGAATAcatgtgcttttatttgttaaaatatcttGTTGGTGCAGTTGCAGGTAGATATTTTGTATGAAATCCCTTCAGTTCATGTtcattttggtttccatttggGAAAGAGAGCTAAACGAGGTGAGCGAACTGTTATTAATATGCGgtgctttgttctgttttggcGATCTTTCCCAGTTCATCTGCGAGCCACATAGCATCATGGGAGCAGAGTGTGTTACCATGACAAAGAAACATCAGGACATCACAACTCCCTGTGTCAGGAAGGCCACGCAGAGATCGAGAGAGCTGCAGCTCTCTAAGGACATTGTAACAGAGCTTTTCGTAACAGACTCAAAGATTTCCATAAAAGTCCTGTTCAGATACTGTCAAGTTGACAAGCATCTGGATTGATTGCCCAAATGAAAGGTCTAGATAGTGCTGAGTCAGGTCACATCATTCAGCTCTTAAATgaggaaattgtttttttgtttttgttgttttattgactCACAAATTCAGGAACTAAAATCATAAAGAAGTTTTTAAACCTTGAAAACCCACACATTGAAAATActcctgtacacacacacacacactcactcacatttTTAATGCCATTTATCCCTGACAGTCATATCCAGGGggtgattttaatgttttgtaatttgtgttttacagtagACACCTGTATTTTAACCTACATTTTATAACTATacagactttttaaaaataaaactagaataTTTGTAACagcgtttttatttttatctgagttctggagagaaaaaaaagctgtatAAAGTGTCTTTATCTTCTGTGATCCAGCCTGCTATCTGCAATAGTTCAATGTGTCTGTCTGAgtgtaaattaacatttagccCTGAAAAATCTGCATCAAATCACAAgggatttttttgtgttttcctggtgtttgcaaaaaacaatacatttattaaaactgaGGGATTTTTTGGCTTTCAGGTGGGCATTTCAttagtgtgtctgttttgtttaacagtGCCTGTTGAGATCACTGCTGCCAGCCACTTGTACActaactatttaaaaacagaccaaCGACTGAATAAAAAGCCAGGGGGTGCAGTGCATTCATTATGTAATGAGGCAGTGAGGGATGGACGCCATCCCAGCATGGGAGTTAAGTCACTGACTTGCCTCCTCTGGCCTCTCTCTGCGGTGCTGTTCTGTCGGCTCTGGGTTGTTGACAATGGGGCGGTTGCAGAAAGGAAGCTGAGACTTCATTGcgtgtttttaaattgtatgtcaGTGGCTTGAACCCTTGATCCCTTGGTCCCTCTGTGCCCTCCCTGTGACCCCCCTGCCTCTGCTTAAACACGCCGTCCTTCCTGTGTGGGGGGCCAGGAGGCTGCTGGTGACGGCAGGGTTTGTCTTTAAGTTTCAGTTATATAATATTCCAACACTATATTTGcactaaatataattaaaatgtttatgtattatttttgtattaaaaaaaaataataataattctgtataTACCCTTC

Function


GO: NA

KEGG:

id description
K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77567 lncRNA downstream 234408 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 320309 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 325034 13821748 ~ 13823540 (-) True G61927
TU77540 lncRNA downstream 335571 13811971 ~ 13813003 (-) False AMCG00020256
TU77717 lncRNA upstream 175656 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 183849 14353490 ~ 14401302 (-) True G62066
TU77815 lncRNA upstream 533870 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 862494 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 1253514 15423155 ~ 15423574 (-) True G62283
AMCG00020270 mRNA downstream 2890 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020261 mRNA downstream 258043 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020251 mRNA downstream 266385 13877282 ~ 13882189 (-) True AMCG00020251
AMCG00020254 mRNA downstream 296105 13850330 ~ 13852469 (-) True AMCG00020254
AMCG00020257 mRNA downstream 299490 13848344 ~ 13849084 (-) True AMCG00020257
AMCG00020274 mRNA upstream 72224 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020278 mRNA upstream 142771 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020282 mRNA upstream 236142 14405783 ~ 14427264 (-) True AMCG00020282
AMCG00020283 mRNA upstream 267155 14436796 ~ 14437815 (-) True AMCG00020283
AMCG00020284 mRNA upstream 269890 14439531 ~ 14440544 (-) True AMCG00020284
TU77648 other downstream 17005 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 340241 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 340241 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 482989 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 551657 13595518 ~ 13596917 (-) True AMCG00020230
TU77709 other upstream 160881 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 1929259 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1929259 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1949348 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 2083147 16252788 ~ 16255119 (-) True G62415

Expression Profile