RNA id: AMCG00020270


Basic Information

Item Value
RNA id AMCG00020270
length 1510
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00020270
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14138412 ~ 14145684 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCTGCTGCTGTGTATTGGTGTGTGCTCCGTGTTCAGCTCAGCCCTACTCCCGGCACAgtggaggagagaagaggagaggccTTGGAAAATATAACAGCACAGCATCCAGCCTCAGCGCCAGCCAGCCGAGCAGAGGAGAGCGTCGAGTGGGTCCTGAGACCGGAGCCTCCAGCCCTCAGACACAGCACAGAGGCCATTGGCACAGCACCCCCACAGGCCAGAGCCGGGCAGAGCTCTGACAAATACACCTGGGACCCACTGGGCAGGAGGCAGCAGtGTAGAGGacgcaggcaggcaggcaggcaggcaggcaggcaggcacagTGTGGACGGCTCGTGCAGCACAGCTGTGGGAGTTACGGAGATAACTGTCTCACCAACTCAAAGCCCAGTCACAATAGCAAAGTTGCACCAGACTACGGCGTTGTCAGGATGGCAGAAAGTGACATGGCAGAACTGCAAGAGTCCTTCAAGAGATTTGCGATTCATGGCGACACAAAGGCCACGGGCAAAGAGATGAACGGCAAGAACTGGGCCAAGCTGTGCAAGGACTGCAAGATCACTGATGGCAAGAACATCACCGGCACTGATGTGGACATTGTCTTCTCCAAAGTGAAAGCGAAGACAGCGCGTGTCATCACCTATGAGGAGTTCCAGAAGGCGCTGGAGGAGTTGGCCTCCAAGAGGTTCAAAGGTCAGAGCAAAGAGGAGGCACTGCAGTCCATCTACAGACTGATCGAAGGCAAGGGGCCGGCCAACGTGGGCGTGACGAAAGTGGCCAAGAAGGGCGCAGTGGACAGGCTGACGGACACGACCAAGTACACCGGGTCCCACAAGGAGCGCTTCGACGAGAGCggcaagggcaagggcaagggcGGGCGTGAGGACCTGGTGGAGCAGACCGGCTACGTGGGTGCCTACAAGAACGCTGGCACCTACGACGAGAAAGCCAAGACCAAGTAGCCCGGCCTCCCTGGGGCCCGGCGGCTGCTCTTCGCCCGCTCAGACATGAGCCGTCTCCACAGTGTTTTTTCAGTCGCCATGGCAGCAGACACAGGGCAGACATCCCCGCGCTGAGCACAGGCCACTCTCACACCACAGGGACACGTCTTAAGAGGATCTTCAGGATGACTTTGCTTTCCCAGGAAGTGTAATGTTCTGTCTCCTTAACAACAAGTCCTTAATGTTCTTCTTAATGCTTTTTAACGCTGGggtattttaatgcatttccttctttctcttacttcttaattacatttttttgtgttttgtttgattcaATTTAGCTTTGCgttatatttttgtaacacaGGTGGTAAGACACCAATTTACTGTATTGGAActggaaattaaattgtaattcaagtaaaagaaaacaaatgcagtgctTTGGCAGTCTTCAAACTAAATGTGGTGCATCTCTTAGACTCCGTTTTATTAATTAGCTTCTTGGCAGGAGTCAAATAACTTCATTGTACTAACTTTAAAACCCTGGAggagagtgggg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77567 lncRNA downstream 224246 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 310147 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 314872 13821748 ~ 13823540 (-) True G61927
TU77540 lncRNA downstream 325409 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA downstream 325409 13811971 ~ 13813003 (-) False AMCG00020256
TU77717 lncRNA upstream 199613 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 207806 14353490 ~ 14401302 (-) True G62066
TU77815 lncRNA upstream 557827 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 886451 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 1277471 15423155 ~ 15423574 (-) True G62283
AMCG00020261 mRNA downstream 247881 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020251 mRNA downstream 256223 13877282 ~ 13882189 (-) True AMCG00020251
AMCG00020254 mRNA downstream 285943 13850330 ~ 13852469 (-) True AMCG00020254
AMCG00020257 mRNA downstream 289328 13848344 ~ 13849084 (-) True AMCG00020257
AMCG00020258 mRNA downstream 300194 13837802 ~ 13838218 (-) True AMCG00020258
AMCG00020269 mRNA upstream 2890 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020274 mRNA upstream 96181 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020278 mRNA upstream 166728 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020282 mRNA upstream 260099 14405783 ~ 14427264 (-) True AMCG00020282
AMCG00020283 mRNA upstream 291112 14436796 ~ 14437815 (-) True AMCG00020283
TU77648 other downstream 6843 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 330079 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 330079 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 472827 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 541495 13595518 ~ 13596917 (-) True AMCG00020230
TU77709 other upstream 184838 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 1953216 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1953216 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1973305 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 2107104 16252788 ~ 16255119 (-) True G62415

Expression Profile