RNA id: AMCG00020273


Basic Information

Item Value
RNA id AMCG00020273
length 4333
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00020273
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14195784 ~ 14232268 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGGATCCCATGCCATGGAAGAATACGCCCTCTCCTTCTGGATTTACATGGGGGTGATGTCTGTGTTCGTAGGGGGAGCCATGAAGAAGATCCTGGCTTCCCACATCAGTGCAGCCCCCAGTCTCCTGGTGTGGCTGGGActgctgctggtgctggagAGACTGTGCTCCCTGTGTCTGCCGGCACTGCTGGGGCTGGCTGTGCTGTGCGCTGCCTGCTGCTTGGTCTCTGGCAGGAGCTCGGCAGCCCAGACCCTGTCTGCCGAAGGGAAAGCGGTTTTCATAACAGGGTGTGACTCCGGGTTCGGGAAGGCGGCAGCCCTACAACTGGATGCTCTGGGATTCGAGGTGTTCGCCAGTGTCCTGGACCCTGCCGGGTCAGGGGCAACTGAGCTGCGGCGCCGCTGCTCCCCTCGTCTCACCGTGCTGCGCATGGACATCACCAAACCACAGGAGCAGCAGGACACTCCTCAGTGTTGCCAAACTGCAGGCCTGTGGGGACTGGTTAACAACGCTGGGATCTGCGTCAACTTCGGGGATGCCGAGCTGTCCCTTATGTCCAACTACAGAGGGTGCATGGAGGTCAACTTCTTCGGTACGCTGAACGTCACCAAGACATTCCTGCCCCTAGTGCGACAGGCAAAAGGGAGGATCGTCACCGTTTCCAGCCCTTCAGGGGAGCAACCCTTCCCCTGCCTGGCGGCGTATGGAGCGTCCAAAGCTGCCCTGAACCTTTTCATCAACACCCTGCGCCACGAGCTGGAGCCCTGGGGCGTCAAGGTCTCCACCATCCTGCCGTCATCCTACAAGACAGGTGAGGCTCCTCTGAGATCCCAACAACTGCCTACAACTTTCACAGCCCTGTCACGTACTAACTGACTGACCCTGCCTGACTGATTCACTTTTACATTTACCGACTGACTGTATGAAGGCACATCTTACATCATAcagcaccaattacagcctcccACTGTGTGTAACGGACTGTGGACCAGCACCACTCTGCAGCCCAGCAATGCAGTGAGAAATGCTTGGGGATGTTACTATGCAGGGCTTTACCGCTCACGTTCAAACTTCACTGAGCTGCTTTTACATGAATAGAGTTATTTCTGTTATTCCCACACCATTCCTCGCTAGCACAGTCTCACACTTACAGAGGGAGTAGTAAAGAGGAAGTGAAACTAAATCAGAGTGAAAAAAGGGAAAcgggcacacagacacacatgtatatacacatgcacaaacacacacacagcaatggaGTTTTGCCTGTGAACTGCTCACAATGAAGGTCAGCTAAGTTTACGCAAGTCAcagccaacacaaacacacaagaactGCTAGGAATTTCACAGTAAATTACTGTTAAGTTGCTTCAGGTACTTTACTGGGCTCTAAATGATGACAGATGCAGTATTTAATGGAAACAAACCTGCCATGTTCCAATTATATGAGGGACATTTTCAAGTTAATGCTGCTGTGCAATACAGTGCTCTTCATCTGTTTtctttactgttatttatttatgtatttacttatttatttagccaACTCTAGAGAGTTCTCCAGCACAGAGCccatctcctccctccctccagacTGGCCCCAaattctttcctctctcctctacCCTGAAAATCTGAAGGCACAAAACTGGGCTGTGACAGGactgtgactctgtgtgtgtctatgctGAGGCAGGGTGAGGCAGGAGACCTGAGCAGCAATGGTTGAGACGGCCTGCCTGCATTGTGCTGACTCTGCTCGGCTGCTCAAAGCAACATGGGCTCCGGCCAGCAGGGTGTGACCGCAGTGCGTGAAGCCAAGCACGAATCAGGAGAGGCAGGGTAGGCAGGGGGCCCTCACTGGGCCAAAGGGGGTGCTCCAGAAAGAcgcaccacagacacacacagggagttGCAGACCAGGGCTGAGAGGCTGGATAATTGTGCAAGCCGCCTTATAAAGGACTTCTGCTTTACTGCCTTAGTTGAACTTTGCCTGGATCTGTCTGTGGTGGGCTGTGCAGTTTCCAAGGTGCTTAaatagcatttattttctctttccttgTTGATGacataattatattgtaaatttgaagattatttatttgagcTTTACAGGTTCGTTCGGCAAGGAATTCTTTATCTAGTTGATTTATTAGGACCAACATCACTAATGCCACCCCCACAGTCATGCATTGACACAGTGCCACAGACCCTCTGTGTGGCTGCGCTACTTAGCCAGTGGTATATGTTCCTCTACACTGTAGGCCAGCCAGGTAATATTTGAGTAAATCTGCAGTGTGCAACGCTGTTCGgaaatttgtatgtattattctttgtacGTACTGTGTAGATAATACAATACTTTGGTTAATTGCCGCTGAATTGCTGAGTTGCTGAAGACGATAAGTATTGTTGTGGGAATAGAGTGCTGCTGTTAAAACACTGTCAGGGGGAtatttaccttaaaaaaaaattattgcaCCAAAGGCATCATTGATCAGtctgtgaaaagaaagaaataatctGATCCAGTTTAACAATATATGCTTGAAACCTTGATGTTCAAGTGTAGACATGACAACTAAATACCCAAGTTCACACTCACAGCCAGCTTCTAATACAATGATTCCTTTTCCTTCTACACCTTCCTGTTTAAggaatacaaaattcaaataagCCTAACcagtcattacatttaaatagactGTAAGCAAGATCAAACACAGTACATGTTCCAACAGCCTAGAAATAATATAGATGGCTAAAtggtgaatatatatttctatatggTATACTGTTGGCCAGCAAAGAGCTCTAAGTAATATCTGCAGACTGGgataaattatattgaacacCACTGCATTTTGGGGTCATTGACatttatgcaattaaaaaacaataaactaagGCATTTAACTTATTTGCAATTGTTTGTTAGGCTTCTTCCCTGGCTCTTGCAGACACAGAAGTATTggctttattcaatataatgttcTTTGCCTCCTCATAACCTTCCATAATAAGCTCTGAAATAGGCTGCACGCTCTTTTACCTTCGCCAAATCATAATTTCGGCACCACTGAGCATCCTTTCGTATCCAAATGGGAATGCGCACTTATCCTCGATGAGAAAAGTCTGATTTAAGCAAATGGTCTACTTAAATCCGTGATGGAAGAACCGAAAATCCCTGATATCAGTTAACGCGTTACCTCAATCCTATCCTGACTTTGTTAAAACATGTATGAAGAACGGACCCCAGTAGTATTGCTATGTCCACTGACTGACTCATGTCCTTTTCCAGGTCAGTCCAGTAATTTGGCATACTGGGAGCAGCAGAACAAGCAACTGATCCAAAGCTTGTCACCCAGCCTGCTGGAGGAGTACGGGGAGGAGTACCTTCTGGAGACCATGGAGCTGTTCAAGGCTTACTCCGAAACGGCCAATGAGGACTTCAGCCCGGTCATCAACACCATCAGCGAGGCGCTGCTCTCGCCGCGGCCCCAGGTCCGATATTATGCAGGTAAGGGCGTGGGGCTCATGTACTTTATCTACAGCTACCTGCCCCTGTCCGTCAGCGATcgcttcctgcagcagctgtttGTGAAGAAGAAAGTCCTGCCCAGAGCTCTGCGGAGCCAAAGCACcagccacaacaacaacaacaacatgctgCACAAATGAACAGAAACAGCAATCATCCAACAGAAACAAACTAGGACCTGTTGATGAAAATGAGACTGTAgtgatgttttgttatttgtattgctgttgttgtattttttggaaGGGATCACTGAACTGTACCAAACATTCTGTGAaggaacacaatttaaaaaaaagactttcaaTGATAAAGGTTCAGAACCCGAGTGTCGCAGAGAACAGGTGCTCCCATTAGATGGCATTCTTCAGAGATGGCTGAAGTGATTGAGGCTCTTCTCTGAATGGCCCTGTTTGGAAGAGGCCTGGTCACAGCCGCCATGCTGAGGATTTGCTGACCACCCCCCTGCCTGGGACCCCCAGCTCCCTGAGCTCCACACTGTACCTCTACTGTGCCACCAGTACACTCTCACATGAACACATTGTACCTTCACTCAGAAATACTCAGGTCTTCTTTTTTATAAACAGCACATCCACATTCATCCATTTGAAAGACCCTTTAACCATGTTTCACATAGAGTTGttgttttacctttttgtttaaaCACTCCTATACATTGTTGGTGTCTTCTTCCTCACTGTCTTTAGTCCAAATCACATCGTTGAATCATATTTATGCCAGTTTTCGTCATGAATCAGTGAAACTGtgaattttgtaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77651 lncRNA upstream 68378 14137426 ~ 14137829 (+) True G62014
TU77650 lncRNA upstream 69271 14136420 ~ 14136936 (+) True G62013
TU77649 lncRNA upstream 69920 14135298 ~ 14136287 (+) True G62012
TU77505 lncRNA upstream 275467 13877311 ~ 13930740 (+) True G61904
TU77495 lncRNA upstream 315779 13888151 ~ 13890428 (+) True G61895
TU77683 lncRNA downstream 9597 14241865 ~ 14288834 (+) True G62039
TU77711 lncRNA downstream 113028 14345296 ~ 14401302 (+) True G62062
TU77769 lncRNA downstream 322588 14554856 ~ 14621700 (+) True G62108
TU77775 lncRNA downstream 334451 14566719 ~ 14567438 (+) True G62114
TU77779 lncRNA downstream 345239 14577507 ~ 14578702 (+) True G62118
AMCG00020268 mRNA upstream 107558 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020266 mRNA upstream 150477 14052358 ~ 14055730 (+) True AMCG00020266
AMCG00020263 mRNA upstream 183880 14000227 ~ 14022327 (+) True AMCG00020263
AMCG00020264 mRNA upstream 211068 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020262 mRNA upstream 230648 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020271 mRNA downstream 25304 14257572 ~ 14259160 (+) True AMCG00020271
AMCG00020272 mRNA downstream 29714 14261982 ~ 14272204 (+) True AMCG00020272
AMCG00020277 mRNA downstream 62465 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020275 mRNA downstream 82124 14314392 ~ 14332409 (+) True AMCG00020275
AMCG00020276 mRNA downstream 107567 14339835 ~ 14383230 (+) True AMCG00020276
TU77582 other upstream 255160 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 339644 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 371375 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 855495 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1586390 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 235532 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2582106 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3226892 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3696060 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3826290 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile