RNA id: AMCG00020274


Basic Information

Item Value
RNA id AMCG00020274
length 3367
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00020274
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14241865 ~ 14249749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAGCCGGGTCTCTGTCGCTCCGCCGCCGCACCGACACATCCCTCTGCAGTCAGCAGGATCCGATACACACTTACCGTGAattaataaacaccaaacaTGTCCATCTTCCCGGAGCTGTATTTTAACGTGGACAACGGTTACCTGGAGGGACTGGTGCGAGGCTTCAAGGCGGGGATACTGTCGCAGGGAGACTATCTGAACCTGGTTCAGTGCGAAACCCTGGAAGATCTGAAGCTGCACCTGCAGAGCACAGACTATGGCAGCTTCCTGGCCAATGAGGCCTCTCCGCTCACTGTGTCCGTCATCGACGACAAGCTGAAGGAGAAGATGGTGGTGGAGTTCCGCCACATGAGGAACCAGTCGTATGAGCCGCTTGCCAGCTTCATGGACTTCATCACTTACAGCTACATGATTGACAATGTCATCCTGCTGATCACGGGCACTCTGCACCAGCGCTCCATCTCTGAGCTTGTGCCCAAGTGCCACCCCTTAGGGAGCTTTGAGCAGATGGAGGCAGTGAACATAGCCCAGACCCCAGCTGAGCTGTACAGCGCCATCCTGGATTGTATATCTGAGCAGGACCTGGATGAAATGAACATTGAAATTATCAGGAATACTCTGTACAAGGCTTATTTAGAATCCTTCTACAAGTTCTGCTCTACACTGGGAGGCACAACTGCAGACACCATGTGCCCGATTCTTGAAtttgAGGCAGACAGGAGAGCATTCATCATTACCATCAACTCCTTCGGGACGGAGCTGTCCAAAGAGGACCGGGCCAAGCTGTTCCCCCACTGCGGAAAGCTGTACCCGGAGGGGCTGTCTCAGCTGGCACGGGCTGATGACTACGAGCAGGTCAAAGCTGTGGCAGACTTCTACCCTGAATATAAACTTCTGTTTGAAGGAGCTGGCAGCAATCCTGGAGACAAAACCCTGGAAGACCGATTCTTTGAACACGAGGTGAAGCTGAACAAACTGGCCTTCTTGAACCAGTTCCACTTCAGCGTGTTCTACGCCTACGTGAAGCTGAAGGAACAGGAGTGCAGGAACATCGTGTGGATCGCAGAGTGCATCGCCCAGAGGCACCGTGCCAAGATTGACAACTACATCCCCATCTTCTAGAAGAGtcctctccccttccctcccctcctctccatTCCTCTcctctatattgttgtgttgtAACATGTCTCtcatatgtatgtttaaaataacaaaaaagaagaacTATTCCCCCGCctcaataaataataagtaaatgtCTATCTATTTAGCCAGCAGAAGGGCTGTCCCAGCAAGCTTTGGTGTTTGAACTGACTTTCAGATAATGGATCTATATCTGCCGATGGTTACTGTGCCTGCGTTTCACTTCTGCATGGCCTGTGGATGTCACTGCTTCAGGGACATAAGAGGGGGCCACTGTCCAAGCATGCAGTGTTAGCGTGAATTGTAGAGTTTTCGGATTTTGTCCAAAGGGCATTGGTGTCAGGGCCGTGAAGCAGGTTTGATTTGAACGCTTTGTGTACTGTCGATCACAAGCTGCTGATATTTGATGATTTTCTGATTTTTGATGAGTCCTGTTGGTGAAAACCACAGCAGGAGGACCTACAGAAGCACTGTAGATGGTTCCTTGGGTATCAAGGACAGGTTAAACAATCCGAATATTTGAGcttgggtttgtttttatttcactaaGATTAGTGTTTTTAGCAGAGATCAGTCTATCCTGATCCCTGCAGTCTTACCTTCCGATTAGATGTAGTGATCAGTACCCACAGTGAAGGTTTTGAGTAAAATTTAAGTATCCTACCTTGttctttttgtatgttttctttttcattttcgtTTGGCTTAGTCTTGCTCTGGCCTGGCATGCATGTCTGAAGCTCTCTGCACTGCTGCCTCCAGGGCTGAGTGAGAGGAGGGCTGGGGACTGGCTGCACTGGACAGTACAGCCTTCCTGATAAACCTTGTAGCCAGAGCTGCCTGAGGGAAGAAGCACAACCTCACCAGAAGGTGGTGCGATACCTTGGCAGGAGTTGTGTGGCGTGCCCCCTgggctcacacacacagtggctcCTGTAAAGCAAGGCACTTGAGTGTCTGAGGGAGGGCTGGGTCCACACACCCCCTCGAGCACTGACCCACTTGTACACCTGCTTAGCACCATTCTTTAAGGGCTTCATTCAGTCCCAGCAGGACTGAGGTCTAGACACACTGAGAGGACAGTGTGATAttacacagcacaacacactgaGGATAGTGCGTTATTGCACAACAGTGTGGAAATCCTGGCTGGTCTCAGCCGATGAGGAGTGTGGCGCAGCTAGCAGGGACCAGAGTGTGAAGTCCTGTCTTTGCCCTTCATGGTCTGGCATGCCTCCTCTCTGCCCTACTGGGAACACCAGCTCTGttgatgtctttttttattatttatcaaacAAGAAACTCTGACCCGTTTCTTTTACACATGTCAGAAACACTACTACATTCCATGTTGAAATTATGCTtcattctgtttcttttgtgttttatttgctgCTGGCAATTTAGTGTAGCTTCCTTTATGGCATTGAATGAGTAAAGtggactttaaaaaatatatataaattatgatCATTTTTTAGATTGTCAACTGTGAAAGCATTGAAAGCACTCTCCGCAAGTCTGTGTATCAAGGAATCTTTGATGCAGGTACCAGTGTAAAGGAtagaaaatcaaatgtttttttgaatcgtcaaaaaaacacagacaaaagaaaaacaactttagTGCATCATTGCTGTATTACCATTAGCTTTCTGATACTGTCCTTTAGTTTTAAGCTGAGACTTTTGTTATGACCTTATTTTGACAGCGGCTTCAAGACCAATTACaactttacttttaaataaaggtatctgataaatatgttgttttgcGGTGGTCAGAGCAATGGCAGGCTTCAGCTGTCGTGACTGTAGTGGAATGGCCCCTTAGTGAGTGTTTTGCCGTATGCGGTCAGGATACCTGTCTGGCTGAGCAGGGCCTGCCTCTGGTTGCAGGTAAATTGTGTCCCTCCCCCTTGTGAAGACCAAGATATTCCTAGAAAATAATTCTATAATAgaactttatttaattgaacggattaaattgtattatcatatttaactttaaaactatctatttctctctctctctctctgtatacatatatatatataaatttaaaaaaaaatgtccgaCACTTTTTAAGACCTGCCTTGTGATGTACATATTTGTGTGAAGGCCTACCGTCGAACACTTGATCTTGTTTCCTATTTTGTGAATATTGTGTTCCTCTTCAATGTGACAATAAATATGTAACTTAATTTCATCATGCAAA

Function

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0032438 melanosome organization biological_process
GO:0046688 response to copper ion biological_process
GO:0008057 eye pigment granule organization biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02146 ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77567 lncRNA downstream 327699 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 413600 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 418325 13821748 ~ 13823540 (-) True G61927
TU77540 lncRNA downstream 428862 13811971 ~ 13813003 (-) False AMCG00020256
TU77717 lncRNA upstream 95548 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 103741 14353490 ~ 14401302 (-) True G62066
TU77815 lncRNA upstream 453762 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 782386 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 1173406 15423155 ~ 15423574 (-) True G62283
AMCG00020269 mRNA downstream 72224 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020270 mRNA downstream 96181 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020261 mRNA downstream 351334 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020251 mRNA downstream 359676 13877282 ~ 13882189 (-) True AMCG00020251
AMCG00020254 mRNA downstream 389396 13850330 ~ 13852469 (-) True AMCG00020254
AMCG00020278 mRNA upstream 62663 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020282 mRNA upstream 156034 14405783 ~ 14427264 (-) True AMCG00020282
AMCG00020283 mRNA upstream 187047 14436796 ~ 14437815 (-) True AMCG00020283
AMCG00020284 mRNA upstream 189782 14439531 ~ 14440544 (-) True AMCG00020284
AMCG00020285 mRNA upstream 212664 14462413 ~ 14484977 (-) True AMCG00020285
TU77648 other downstream 110296 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 433532 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 433532 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 576280 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 644948 13595518 ~ 13596917 (-) True AMCG00020230
TU77709 other upstream 80773 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 1849151 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1849151 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1869240 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 2003039 16252788 ~ 16255119 (-) True G62415

Expression Profile