RNA id: AMCG00020275


Basic Information

Item Value
RNA id AMCG00020275
length 3224
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00020275
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14314392 ~ 14332409 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCTCAATAACCCACATGTACCGTGCCCTGCAAGTAAATATCACCACGTCGCAGTCTGATGACGTAGATAGCCGTGCGTCGCACAGGAAGGGCGTTTTGAGGGGGCCCACGTGTTCGTTTCCACCAGCTGAAGTCtgctgtgcagtgtgcagtgtgccgGTGATGAAGGAGGACACAATGCGTGGGGCTGTGGGCAGGCTGTGCTTCCGCAATAAGACCATTTTGGCACCCATGGTGCGGGTGGGCACGCTGCCCATGAGACTGCTGGCACTGGACTATGGAGCTGACCTCGTCTACTGTGAGGAGCTGATTGATATGAAGATGCTGCAATGCCGGAGGGTAGTGAATGAGGTGCTGGACACAGTGGACTTTGTGGCCCCGGATGAAAGGGTGGTGTTCAGGACCTGCCAGCAGGAGAAGGAGCGCGTTGTCTTCCAGATGGGAACCGCGGACCCCCAGAGAGCACTGAGCGTGGCCCGGCTCATtgaaaatgaTGTCGCTGCCATCGATGTGAACATGGGCTGTCCCAAGGAGTACTCTACCAAGGGCGGCATGGGGGCGGCTCTCCTCTCGGACCCAGACAAGATTGAGGCCATCCTGAGCACGCTGGTCAGAGGCGTGTCCAAACCTGTCACCTGCAAGATCCGCATCCTGTCCTCGTTGGCCGACACGTTGAGCCTGGCACGGAGGATAGAGAAGACGGGCgaggagaggCCGCAGCACCCTGTCCACTGCGACGTCATCAGGGCTGTGTCCGAGGCGCTGACCATCCCTGTCATCTCCAACGGCGGCTCTCTAGACTGTGTGAAGACTCACGCTGACATCACGGCGTTCTGCACAGCCACGGGCACCTCCTCGGTCATGCTGGCACGCGCTGCCATGTGGAACCCCTCCATCTTCCGGCAGGAGGGTGCCCTGCCCCTGGAGCAGGTCATGGAGCAGTACCTCCAATACGCGGTGCGCTATGAGAACCACGCCTCCAACACCAAGTACTGCCTGTGCCAGATGCTGCGAGACCGGCTGGAGTCTCCACTTGGCAGACAGCTACATGCCGCCCAGACTTGCACAGAAATCTGTGATGTGTTCGGCCAGGGGCAGTTCTGCAGGGAGACCCAGGCCAGGATGGAGGCCAGGCGCTCAGCCACCCAGTCCAGGAGCCAGGACCCTGACGACCTCTGTGACGACACTGACGTCATCAAAATGGCTATCAAGTTTGACAGGAGAGACTACACCCCCCAGATCACACCCAAGATGTTCCTGTTGGAGTGGAGCCGCAGGGAGAAGCTGGCCCAGCCGCTGTACCACACGGTGCAGAGGCCCCTGGACAGgGACAAGTCCAAGAAGCTGGCAGAGCAGGCAGCGGCCATTGTGTGTCTGCGCAGTCTGGGCCTGCCGGAGGGGCGGCTGGGGGAGCAGGAGAGCGGCTTGGtcaagaagaggaggagggaggaggagggcgagTGCAATGGTGGCAACGATCCAGCAGATGCCACCAGGGAAACATAGCACCCCGACACCCCCGGGGAGAGCTGAACCAATGGACTGCAGGACAGGAACCCCAACCACCCCTCACTCTCGCTGCTACCTTCATGCAGGACGCCAGACTGCAGGGGGCGCTCTGTCCTGCTCTGTACCCTCTTCATGAttctatacttttattttttttaattgccattaTTAAACTCAATGCTGTTGTGGCGGTGGGCTGTCTGCAGGGTGGGGGCGCCAGGTCACACACACCTGGGATGACCTCCCCTTTTCTCGCTGCCCCTGCCACTCCAGCAGCCTCTCATCCACAGCTGGGTTTCTGATCGCTTCCTGATTTAATAAAGACTCTCTATTTTagataaattaaacatttgacaCTTTTTCTTCTAAGGACGGTAGACTGGGGTTGTAGTATTTAAAGAAGGGAGTTTATACTGGGCGGGGCGGGTCAGATCCAGTGGCCTACAATGCCATTATTCCTGGTCTCTCTCTGGAACGTTATACACTCTCAGTTTCTGAACGGTGTGCATGACCTTTACATTATTAAAGATATGAGCCGTACTGTCAGGGGCCTGCTTTGTCAAGCGTACAGCTACTGAGGTCTTTTAACAGCATGTTCAGCATTAAAAGAGTATCGTCCCTGAGGTTTCATCTGCATcgtgtgtttttaaaaggagaaGGAAACCTTTACTGGTGGGGAACTACTTATAAGAAGCTACTTTAttaatgattataaataaaccagatatttattttcacctcTTAACAGTCTATCATCCTATAGaagtttgttttcctctcttctCTACCTGATGGTTTATTTTGAGATTATATGTGATCGCAATGTTGTGTAGGTGCTTTGATTAGTGAAGCGTTTTTTGACAACATTGCAAAGGgtgctataccaaataaaaatggattgattggtTGACTTTACCCAGGGATGTCGCGCTCTCTTGCTGATTTTCTGTATTGCTGTGTGTGGAGTGCTGCTGATATAAGACTACCAGAGTTAGGTAGGGTTAGAATTAGTTTATTTCTACATGTGAACACCAGGTGGCAGTGCAGACACATCCCTCACTGATTTATCAGATGACAAATCGCCAGGAGTTTTTATAAATTCACAGAGTAATTAGAATCGGTGATTTAGGAATCATTTTTATCcacagcaatgtacagagacccTGCCTCAAATTGTAACCAGTAGACCATCTAGTCACCTCACTACAAAGCCTCTGTCctgtttatgtaatttataactCCAGATttgtacagtttattattattaaaacccATTATATTGATCCGAGGCAATACtagttctgttttttctgtcGTTCATCCCAATGGCACAATAGTTATTTTCTCCTGCagtgtttgtgctgtgtttatatGAATGCCTGAACTTTAAGTGCCAGGGCGGTGCGTTCTGGATGGACCGGGATACCGTGGGACACAATGCTGCCCAGTGAGTGACATGTGGATCAGCTAGGCCCAAATGCGGGACACCCTTTCTATATTGGGGGTGAACTCCTAGGCCTTCCTATGGACGAgattaaaacattgtgaaatgAGAGTATGTGTGACTCAGTCTGACACTGGCAGTTGAAAAGGAAACTCACAATAGGTTGGCATTCAGCAGTAAGATATCCATATGTCTTTACTTCAGCTTTGGGTAGGGTGAAGAGCTGTAAAAGTTTTACAATTGCAAATAAACACTTACTTTTCTTTGACA

Function

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05543 DUS2; tRNA-dihydrouridine synthase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77683 lncRNA upstream 25558 14241865 ~ 14288834 (+) True G62039
TU77670 lncRNA upstream 96011 14195784 ~ 14218381 (+) False AMCG00020273
TU77651 lncRNA upstream 176563 14137426 ~ 14137829 (+) True G62014
TU77650 lncRNA upstream 177456 14136420 ~ 14136936 (+) True G62013
TU77649 lncRNA upstream 178105 14135298 ~ 14136287 (+) True G62012
TU77711 lncRNA downstream 12887 14345296 ~ 14401302 (+) True G62062
TU77769 lncRNA downstream 222447 14554856 ~ 14621700 (+) True G62108
TU77775 lncRNA downstream 234310 14566719 ~ 14567438 (+) True G62114
TU77779 lncRNA downstream 245098 14577507 ~ 14578702 (+) True G62118
TU77862 lncRNA downstream 699633 15032042 ~ 15034083 (+) True G62185
AMCG00020277 mRNA upstream 11393 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020272 mRNA upstream 42188 14261982 ~ 14272204 (+) True AMCG00020272
AMCG00020271 mRNA upstream 55232 14257572 ~ 14259160 (+) True AMCG00020271
AMCG00020273 mRNA upstream 82124 14206207 ~ 14232268 (+) True AMCG00020273
AMCG00020268 mRNA upstream 215743 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020276 mRNA downstream 7426 14339835 ~ 14383230 (+) True AMCG00020276
AMCG00020279 mRNA downstream 106669 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020280 mRNA downstream 119366 14451775 ~ 14461301 (+) True AMCG00020280
AMCG00020281 mRNA downstream 135443 14467852 ~ 14472545 (+) False AMCG00020281
AMCG00020292 mRNA downstream 656621 14989030 ~ 14990430 (+) True AMCG00020292
TU77582 other upstream 363345 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 447829 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 479560 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 963680 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1694575 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 135391 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2481965 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3126751 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3595919 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3726149 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile