RNA id: AMCG00020280


Basic Information

Item Value
RNA id AMCG00020280
length 2232
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00020280
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14451775 ~ 14461301 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAGGTCTAGTGCTGCGGTTCATAACTGTTACATATCCTGCACAGCGCAGAGTGGATCGGTATAAGAGAGGGATCATATTCTGGGTGGGGACAATGCATCTGCTCTCTGTGGCGGCTGTGTTTTCTGCCATACCAGTACACACAACGTATTGACTGGATCCAACGGGACTGACATGGCTGTGTGGAGCTGCCCCCCATCCCAGTGCTCAGGTTTCTGGTTCCGGCCTGTGGAGCTGCTATTTCTCAGTCTGCTGTGCACAGGGTCCGTGGCCACCAGTCTGGAGGAGAGGACTTTGAACCTTCTGTCACGAGAACGCCTGATCGACGGGCACAACGATCTGGCGCTGAAGATGAGAATCATATACGATAACCAGCTGAGCAAGGTGGACCTGCGGAAAATCCCCCAAACTGCCACGGACATCTCTCGCATGCAGGCTGGACACATTGGAGCGCAGGTGTTTTCGGCCTATGTGATGTGCACGGCGCAGGAGAAGGACGCGGTGCGGCTCACCCTGGAGCAGGTGGACTTGATCCTCCGCATGTGCAATGAGTAcgaggagctggagctggtcACCACCGCTGCAGGCATGAGGAACACGAAGAAGATCGCCTGCTTGATCAGCATTGAGGGAGGGCACTCCATCGACAGCAGCCTGCCCACCTTGCGGATGTTCTACCAGCTGGGTGTGCGCTCCCTGGCACTCACGCACACTTGTAACACACCCTGGGCAGAATCATCCTCCAAGATCTACCCATTTTACAAAAGAGGAAACAACAGCCTGACTGATTTTGGGAAGGAGGTGGTGCTGGAGATGAACCGACTGGGCATGCTGATTGACCTGTCGCACAGCTCAAAGGGGACGGCCTGGGCGGTGCTGAATGTGTCCCGCGCCCCCGTCATCTTCAGCCACTCCTCTGCCGATGCGGTCTGTCCCCACATCCGCAACGTGCCCGATGACCTGCTGCTCAGAATGGTGAGGCGTGAACACAGCCACCCGCGAAAAGAAACACGTGGCCTGATCATGGTGAACCTGTACAGTGACTTTGTGGCCTGCGGACAGAAGGGCAACATCTCCATTGTAGCAGACCATTTCGATCACATCAAGAAGGTGGCCGGTGCAGAGTCCATCGGGATCGGGGGAGACTACGACGGAGCCTCTGGGTTCCCCGACGGCCTGGAGGACGTGTCCAAGTACCCGGCCCTTATCCAGGAGTTGCTGAGCCGAGGCTGGAGCGAGAACGAGCTGGCAGGGGTCCTGCGCAACAACTTCCTGCGGGTGTTCGAGGAGGTGGAGCAGGTACGCGATAAAAGTAAACGGCAGCTTCCCAGCGAATCACAGATCCCGCAGTCAGAGGCTGCGAACCCGTGTCGGCTGGTCCTGCGCCCACCACCCATCAACCCCCGGAATCACGCTGCCCACCCCGCTGTGCCCTGGCTCTTCACCGTCTCTGCTGTGTGCGCCACCCTTCACTCCTTCCTCTCTGGTGGCAGTACTATATAACCTCTCCTGGGCTTGGCTCCTGACCTGTGTATGGCTAGTGTGCTTGAAATGTTATACATATCTGTACAGCAATAGCACAATGTAACATTATTGCACGTCTGAAATTAGTTTTGCATGTAGCCTACTGTAGCACTTTACCTGACAGCATTACAAATCCTTACAAATGTGAATATAGTCCAGTTATAAGAGTCGCTACATAAATCGAAGGCCTTTACTCTCACATTCTGGTGCAGTGCCTGTGGATTTGTATGGAAACAATgcattaaactaaaaataatgttattaatcaGTAATAGAAGTTTGCTTCTGCTTCTAATAGTCTCATATTATTGAAATCTGAGAGCTGCCTTGCATTTGTGGCCTTTTTAAGTCACAGATTCCAGCCCGCTCGGAGTCCATGTTGAGAGTCCCCACCCCCCTCTacaatgtattttgcatatctGTGACCATGTTTGTCTTTTCAGCCGTATAGAGTCAATAGTTACcctaatatgtaaattaaattgtagcCTTGGTAACTTCCTATTCCTCCTTCCTCTACAATGTGCAATGGTGCTTCTGCTTAAAGACACCCCCCCTCTTCTCAGGCCAGTGTCTGTGTATcagaaaggaaggaaaacaaacgGCAGCCTGAGTCCAGCCGAAATGTGTTAAACCTGTCAGACCAGTGTGAGAGTGCTGTAATGCCTGAATGCACTTTAATAAAACTCACTTCATTACAAGGGAGG

Function

GO: NA

KEGG:

id description
K01273 DPEP; membrane dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77711 lncRNA upstream 50473 14345296 ~ 14401302 (+) True G62062
TU77683 lncRNA upstream 162941 14241865 ~ 14288834 (+) True G62039
TU77670 lncRNA upstream 233394 14195784 ~ 14218381 (+) False AMCG00020273
TU77651 lncRNA upstream 313946 14137426 ~ 14137829 (+) True G62014
TU77650 lncRNA upstream 314839 14136420 ~ 14136936 (+) True G62013
TU77769 lncRNA downstream 93555 14554856 ~ 14621700 (+) True G62108
TU77775 lncRNA downstream 105418 14566719 ~ 14567438 (+) True G62114
TU77779 lncRNA downstream 116206 14577507 ~ 14578702 (+) True G62118
TU77862 lncRNA downstream 570741 15032042 ~ 15034083 (+) True G62185
TU77943 lncRNA downstream 836446 15297747 ~ 15298181 (+) True G62251
AMCG00020279 mRNA upstream 1124 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020276 mRNA upstream 68545 14339835 ~ 14383230 (+) True AMCG00020276
AMCG00020275 mRNA upstream 119366 14314392 ~ 14332409 (+) True AMCG00020275
AMCG00020277 mRNA upstream 148776 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020272 mRNA upstream 179571 14261982 ~ 14272204 (+) True AMCG00020272
AMCG00020281 mRNA downstream 6551 14467852 ~ 14472545 (+) False AMCG00020281
AMCG00020292 mRNA downstream 527729 14989030 ~ 14990430 (+) True AMCG00020292
AMCG00020291 mRNA downstream 529407 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020298 mRNA downstream 699296 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020296 mRNA downstream 704713 15166014 ~ 15199292 (+) True AMCG00020296
TU77582 other upstream 500728 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 585212 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 616943 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1101063 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1831958 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 6499 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2353073 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2997859 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3467027 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3597257 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile