RNA id: AMCG00020281


Basic Information

Item Value
RNA id AMCG00020281
length 639
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00020281
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14467800 ~ 14472545 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTATGTGCCTGGCTCTGATGTTCATCTCCTCCTGGTATTACGCAATCGTGGCTATGGTTATTGCAGGCATGATCTACAAGTACATCGAGTATCAGGGCGCAGAGAAGGAGTGGGGAGATGGGATCCGGGGCCTGTCTTTGAGTGCCGCCCGCTACGCCCTGCTGAGGCTAGAGGCAGGGCCACCCCATACCAAGAACTGGAGGCCGCAGCTGCTGGTCCTGCTGAAGCTGGATGAAGATCTGCATGTGAAGTACCCGCGGCTGCTCACCTTTGCCTCGCAGCTCAAGGCTGGCAAGGGGCTGACCATCGTGGGCTCCGTCATTCAGGGCAACTTCCTGGACAACTATGGGGAGGCCCAGGCCGCTGAACAGGCCATTAAGAACATGATGGAGATTGAGAAGGTGAAGGGGTTCTGCCAGGTGGTGATTGGTGCCAAGGTGCGAGAGGGCATTGCTCACCTGATCCAGTCATGTGGCCTGGGGGGCATGAAGCACAACACGGTGACCAcagagtacagcacagtgaagCACTGCCACAGCTCCCCAGCCCAGCTCACTTGGACCATACCCCCTCTACACACTGACCCCAAAACTGCTCCAATGCATCTGATGGCCATATTAGATTGGTGTCTCTAA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015379 potassium molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77711 lncRNA upstream 66550 14345296 ~ 14401302 (+) True G62062
TU77683 lncRNA upstream 179018 14241865 ~ 14288834 (+) True G62039
TU77670 lncRNA upstream 249471 14195784 ~ 14218381 (+) False AMCG00020273
TU77651 lncRNA upstream 330023 14137426 ~ 14137829 (+) True G62014
TU77650 lncRNA upstream 330916 14136420 ~ 14136936 (+) True G62013
TU77769 lncRNA downstream 82311 14554856 ~ 14621700 (+) True G62108
TU77775 lncRNA downstream 94174 14566719 ~ 14567438 (+) True G62114
TU77779 lncRNA downstream 104962 14577507 ~ 14578702 (+) True G62118
TU77862 lncRNA downstream 559497 15032042 ~ 15034083 (+) True G62185
TU77943 lncRNA downstream 825202 15297747 ~ 15298181 (+) True G62251
AMCG00020280 mRNA upstream 6551 14451775 ~ 14461301 (+) True AMCG00020280
AMCG00020279 mRNA upstream 17201 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020276 mRNA upstream 84622 14339835 ~ 14383230 (+) True AMCG00020276
AMCG00020275 mRNA upstream 135443 14314392 ~ 14332409 (+) True AMCG00020275
AMCG00020277 mRNA upstream 164853 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020292 mRNA downstream 516485 14989030 ~ 14990430 (+) True AMCG00020292
AMCG00020291 mRNA downstream 518163 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020298 mRNA downstream 688052 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020296 mRNA downstream 693469 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020295 mRNA downstream 739545 15212090 ~ 15218030 (+) True AMCG00020295
TU77582 other upstream 516805 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 601289 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 633020 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1117140 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1848035 12615792 ~ 12619817 (+) True G61491
TU78405 other downstream 2341829 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2986615 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3455783 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3586013 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 3595242 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile