RNA id: AMCG00020282


Basic Information

Item Value
RNA id AMCG00020282
length 3722
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00020282
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14405783 ~ 14427264 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGGTCCCGCCCTCACCTTTCCGAATCAGCCAATGGCCTCTTCCGTACGGAGATTGACTTGTACCTCAGGGCTGAGCCAGGCGCAGTTTTTCCCTTGTGGTCCCTGATGGCTTCGCACAGTGATACTCTGGTGGTGTTCTTTGGGGCAACAGCTGGTGCGAATGGGGGTAAACTGGGGTCGGATGAAAGGGAATTAATTCTCTTGGTGGGGAAGGTTCACCGGTGTCTGGTAAAGCCCGACAGCCTGGAGCTGACCGAGCAGTGTAAAGAGGAGACCGGGCTGACGGCGGAGGAGATCTGCAAGGCCGAGCCCCTGGACCGAGCTCTGATACAGtTCCAGCAGTTGGTGTCCAGTGAGCTGAAGGCTCTGGGCCGGAGCTCTTACACACTCTGCACCAACGGGCCGCTGCTCGTGCGACAGGTCTTCCACCCAGAGGCCTCCAAGAAGAACTTGGTCCTCTCGGACTGTTTTTATTCCTTCGTTGATCTGAGGAAAGAGTTCCACGAATGCTGTCCAAACGCCGGACCTGTCAAGGACTTGACAGTGTCCTCCATGTCCGACTATCTGTGCATCCCAGAGCCCGCGGAGGAGGCAGCTGGTCTGCGGGAGGTGAAATCCATGGTGCTGGTGGTTTTGAGCCTCCTCTCTGAGCCCTACAatcACAAGTTCAGCAGCTGTGAAACTGTCAAGTACAAATTTGAAACAGGTGCCTGcagcaaGTCTGAAGCAGTGGACAGTGAGACCATCATCCGCGCCCGTGGCCTGCCATGGCAATCATCTGACCAGGACATCGCCCGATTCTTTAAAGGCCTCAACATCGCCAAGGGCGGTGTAGCGCTGTGTCTGAACGCTCAGGGCCGACGGAACGGGGAGGCGCTGGTCCGGTTCGTGAGCCCGGAGCACCGGGATCTGGCGCTGGatagacacaaacaccacatgGGCAGCCGCTACATCGAGGTCTACAAAGCCACTGGGGAGGAGTTCCTAAAGATAGCTGGTgGTACGTCGAATGAGGTGGCACAGTTCCTGTCAAAGGAGAACCAGGTGATCATCCGGATGCGTGGGCTGCCCTTCACGGCTACAGTGGAGGATGTGCTGGGGTTCCTGGGGCCCGACTGCCCTGTGACAGACGGGCGGGAGGGCCTTCTCTTCGTCAAGTACCCCGACGGCCGGCCGACCGGGGACGCCTTCGTTCTGTTTGCCTGTGAGGAGTACGCACAGAACGCCGTCAGGAAGCACAAGGAGATCCTGGGCAAGAGATACATCGAGCTGTTTCGCAGCACGGCCGCGGAGGTGCAGCAGGTTCTGAACCGCTACATGTCGGCGCCGCTGATCTCCACACTGCCTCCACCGCCCATCCTGCCTGTGATCCCACAGCCCTTCATCGCCACAGGCAATGCGCGGGACTGCGTGCGCCTCCGCGGGCTGCCCTATACTGCCGCCATCGAGGACATCCTAGAGTTCATGGGCGAGTTCACTGTTGACATCAAGCCTCACGGAGTCCATATGGTGCTCAACCAGCAGGGCCGGCCCTCTGGGGATGCGTTTATCCAGATGAAGTCTGCGGAGCGGGCATTCCTGGTGGCGCAGAAGTGCCACAAGAAGATGATGAAGGACCGCTATGTGGAGGTGTTCCAGTGCTCGGGGGAGGAGATGAGTTTTGTGTTGATGGGGGGCACTTTGAACCGGAGTGGTCTGTCCCCGCCGCCATGTCTGTCTCCTCCGGCCTACACCGCCTTCTCCGCGCCTGGTGCTATGATCCCTGCTGAGGCTGCGCTGTACCAGACCCCCGCGTTGCTGGCCACACCCCgcaccccccagccccccacccaCACTGCGCCCACCGCCCTCGCCTACTaccccccccagccccacgCACAGCtctacatgaacatgaacatgaactaTACTGCCTATTATCCCAGCCAACCACCCCCCGCCTCCATGCTGTCCCAGCCTGGTGCCCTGGTCAGGATGCAGGGACTGCCCTACAACACTGGAGTCAAAGACATCCTTGGCTTCTTCCAGGGGTACCAGctCCAGGCCGACGCGGTTCTTGTGTTGTATAACTTCAACGGGCAGCGCAGTGGGGAGGCGCTGGTGACCTTCCCCAGCGTGGAGCTGGCCAATCAGGCCGTGACGGAGCGCGCCGGCCGCCCCCTCTCCGGACACAGCGTCCATCTTTGTGTGCTGTGAACAACCCCCAGCCAGGGGAGGGCAGACTCTGTAAAgcaacactactactactactacacaaaCCACTGCAGCCACAACCTCCCGAACCACAGCACTGTGCCTTTTGCCCTTTGCTGAGGAGCACTTCCGAACCCCCTTCCCTCCCCGGAGCCCATCCTGTTCCTGTCCCGCAGATGCCTCCCAGCGCAGAGGCTGCTGTCCACGTCTCAGTTTCCAGTATTTCAGCAGCGTTCCTGAGGACCAGTGCAGAGCGCCGCTGACCGGGGCTGTCTGTCATCCTGCAAGCCTCACTGGGGCTTCTATAATCCTTTAGTCTTGCCACTGAGCTGaccaatgcaaaaacaatattgtgccagattcaccccccacccaccctaGAGACACCACAAACTGGGCATCCCTGTTAATCACCCAGGCTTGACCACAGAGAGCAGCAGCCGTCTGACCCTGCCCAGCCGGGGATGATTGTTGTCCCCAACACAAACCAGACTCCCAAACCGGATCCTCCTTCACCACAATCCCTTACTGACTGACCTGGTATGTAGAAGACTGTGCGATCCACAGAGCAGTGCACTACATCCATTTAAAGCCATTTATTCGCTTCTACCTTCAACTGCCAACTGGACTGTATAGGAATTGTACTACTGATCTGCAACAtggcacataaaaaaataaaaaaaaataaaaaaaaattgtaagttatattttatttaactttcaaaacaatactAAGTGATGTTAGTTGGGgccacataaaataaatgctttgcttaataaaaataaaaaaagatttctgTAGATCTTAACATGAAGTGTTGgatctgattattttattcactcTGCATGCAGGGAGGGCGCAGTCTTCTCTGGTCAGAGAGGAGGTGTGCAAGACGGGCTTCCTCTCCAAGGCTTGCTATCTCACAAACCTTTAATGATTCAGGATAAAAATATGCCTCTTTACCTCTGGActtgcatgctttttttttttataaatagaggggaaaaaaaagattttctgAAACACATTTACAGATACTGTGAAATTCAATCCTTTTCCTCCCTAAGAGGTGAACAAAACTGCTGGCTGTAGCTTTTAATGAGTTTACTTTATGTGGCCTTATCTGCATGCAAAATTGTTTACACTgttaaacagaattaaatattgtacTATAAAACTAAgatacttgtttttgtttctctctaaTTACTGTGCTTGCTAGAGCATGCtgttttttgtagattttttttttttttttttgtatatgcatataagctatatagatttgtttttatgtgataGTTACAGGAGTGAATCGACTCTGCGGTGGGGGTCAGTGTGCTCACTCCTTGCACGTCAATCCAGCAGAATCGAGTGTGAACGGCCTCGTCAGAGGgacagctgttttgtttcttttcagtttttgattgttttattttaaacaagtttGAGACTTGTCTGAATCTAGATTTCTATGTAATGCCTcttgtattgaaaaaataaatggaaagcgATACTGCAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14947 ESRP1_2; epithelial splicing regulatory protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77717 lncRNA downstream 4481 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA downstream 4481 14353490 ~ 14401302 (-) True G62066
TU77567 lncRNA downstream 491617 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 577518 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 582243 13821748 ~ 13823540 (-) True G61927
TU77815 lncRNA upstream 276247 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 604871 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 995891 15423155 ~ 15423574 (-) True G62283
TU78228 lncRNA upstream 2053266 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 2189059 16616323 ~ 16617421 (-) False AMCG00020336
AMCG00020278 mRNA downstream 91782 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020274 mRNA downstream 156034 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020269 mRNA downstream 236142 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020270 mRNA downstream 260099 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020261 mRNA downstream 515252 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020283 mRNA upstream 9532 14436796 ~ 14437815 (-) True AMCG00020283
AMCG00020284 mRNA upstream 12267 14439531 ~ 14440544 (-) True AMCG00020284
AMCG00020285 mRNA upstream 35149 14462413 ~ 14484977 (-) True AMCG00020285
AMCG00020288 mRNA upstream 69970 14497234 ~ 14545943 (-) True AMCG00020288
AMCG00020287 mRNA upstream 127600 14554864 ~ 14564641 (-) True AMCG00020287
TU77709 other downstream 73376 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 274214 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 597450 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 597450 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 740198 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 1671636 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1671636 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1691725 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 1825524 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 1845187 16272451 ~ 16275573 (-) True G62421

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066283 False 3435 mRNA 0.49 17 NC_007118.7 34794852 ~ 34821828 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_08107438_08129873.mRNA True 2981 mRNA 0.50 17 CI01000026 8107438 ~ 8130480 (+)