RNA id: AMCG00020283


Basic Information

Item Value
RNA id AMCG00020283
length 1020
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00020283
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14436796 ~ 14437815 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTCAGAAGATTCTCCCTGGCAGACATGGGTGGCTTGTGTAATTCTGGGACTGTCTTTCCTGGTGGGCACTCCAGGGAACCTGCTGGTGATCTGGACCATCTTGCGGCACATCCGGCCGCGCTCCCACACTGTGCTGCTCATCCTCAACCTGGCTGCCGCTGACCTGCTAGTCCTCATAACGCTGCCCCTGTGGATCTACTCCCTGGCGGATGCCTGGGTATTCGGCCAGGCCGCCTGCAAAGCCATGGTGTACGTCATCTATGCTTGCATGTACAGCAGCGTGTTCCTCATCTCCACTATGAGCGTGGAGCGCTGCGTGGCTGTCCTGCACCCCTTCGCCCTGCACGGCTGGAGGAAGGAGGGGGTGATGGCAAAGGTGCTGGCTGTCATTTGGGTCCTGGCCTTCGTCTTCAGCATCCCCGTCATCCTCACACACACCGTGGATGAAGAAGACGGGAGGATGCAGTGCACGTTCAGGCAGTATGCTTCCAATGCCCAGGAGATTGTTTGCCTGGTGCTCGAGACCTTGCTGGGATTTATCTTGCCCTTCTTCATACTGTCAGTGTGCTACAGCTGTGTGTGGAAGAGGATAAAGCAGATGACTTTCAAGTCCAAGCAGAAATCCACAGCCTTGATTGTCAGTGTGGTGATCGCTTTTGCCTTGTGCTGGTTGCCGCACCATGTGTGTAACGTCCTGTCTTTAGTGTCTCTGCTACTCCATGGAAATAACAAGAAAGTTGCTGATAATCTAGAAGACACCAGACTAATGCTGCACTATATCTCCGCAGCTTTAACATTCGTGAGCAGCTCTGTTAACCCCGTGTTGTACGCCTTCGCCGCTCGCAAGTTACGAAGCAGCTTCCGAGACTCTGGGATCAGAAAGCTTCTTCGCCACATCTCTAGCTCCAGCATGAACGAGGGGACCAACGAGCTAACGTTCGTGTCGAGAAGACTGAGCTCTCAGACTGACCAAGTCAACTGCAACACTGCTTCATCAATCCACCTGGCTGTTTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77717 lncRNA downstream 35494 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA downstream 35494 14353490 ~ 14401302 (-) True G62066
TU77567 lncRNA downstream 522630 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 608531 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 613256 13821748 ~ 13823540 (-) True G61927
TU77815 lncRNA upstream 265696 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 594320 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 985340 15423155 ~ 15423574 (-) True G62283
TU78228 lncRNA upstream 2042715 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 2178508 16616323 ~ 16617421 (-) False AMCG00020336
AMCG00020282 mRNA downstream 9532 14405783 ~ 14427264 (-) True AMCG00020282
AMCG00020278 mRNA downstream 122795 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020274 mRNA downstream 187047 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020269 mRNA downstream 267155 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020270 mRNA downstream 291112 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020284 mRNA upstream 1716 14439531 ~ 14440544 (-) True AMCG00020284
AMCG00020285 mRNA upstream 24598 14462413 ~ 14484977 (-) True AMCG00020285
AMCG00020288 mRNA upstream 59419 14497234 ~ 14545943 (-) True AMCG00020288
AMCG00020287 mRNA upstream 117049 14554864 ~ 14564641 (-) True AMCG00020287
AMCG00020286 mRNA upstream 126959 14564774 ~ 14578838 (-) True AMCG00020286
TU77709 other downstream 104389 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 305227 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 628463 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 628463 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 771211 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 1661085 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1661085 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1681174 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 1814973 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 1834636 16272451 ~ 16275573 (-) True G62421

Expression Profile