RNA id: AMCG00020288


Basic Information

Item Value
RNA id AMCG00020288
length 1362
RNA type mRNA
GC content 0.54
exon number 15
gene id AMCG00020288
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14497234 ~ 14545943 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCAAGTATGGTCCGCTGATGAGCACGGCAGGCAGCACTCCAGTTCTCCAAGAGAAGAAACCTATCCCGTGTGGACTGTGTTCCTTCCTCAGTGCCATCATCTCcatctccaccaccaccatcatccTCAGCACCATCACCACCATCATCGATCCCAGCGCCATCACCATCCCTGCCAGCCCTTCGCACCCTCTCCGTATCCGAGGCTCGCAGGCGCAGGCGCCAGGGCTGCGGGTCCTGGAGAGGATGAACGTGCAGGTCCTGGCCGACCACACGCTTACCTCCGTGGCCCCTTTCAAGCGCTACATCAACGTGGAGAAAAAGGACGTGGAGTTGATCCTGctGACTGAGTTTAAGAGAATGCCAAGGATGGGCGGCATGGAAGCTGTCATCACCGGCCTCACTGATGACTTCAAAATCCTCAAGAAGAACAGGAAGCTGTTCACTTTCATCACAGCATTCGGCACCTTTTTGGGTGGGGTTTATGTCCTGACACTACTGGATCAGTACGCCGCTGGAACGTCAATTTTATTTGGAGTTCTGATAGAGGCCATTGGGGTGTCCTGGTTCTACGGCGTGGACCGATTCAGTGAGGATATCGAGCGCATGATGGGCTTCAAGCCAGGTCTGTACTGGAGGCTGTGCTGGAAATTTGTCAGCCCCGCTTTTCTGCTGtttgtggTGATCGCCAGCATTGTGACACGCCCTAACTTGAAATACGAGGACTACGTCTTCCCTCCCTGGTGTAACCTGGTTGGATGGGGAATTGCAATGTCATCAATGCTCTTCGTCCCGATCTACGCCATCTACAAGTGCTTTACTTTGAAAGGAACAATGAAAGAGAGAATAGCCTACTGCATTACCCCTGAACATGAACATCATCTTGTAGCTGAGGGAAACATCCGGCAGTTCAAGTCTGGAGAGCTGAACCATCAGACACGCTGGGAGCCCTGGCCTGCATTGTCACAGGGATTACGAAACATTAACGACTCCAGCAGCAGGCCGTCGAGATTTGCAGAGTCTGCAGGAGCCTGGCAAGCCATGATCAAGGAAGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACGCGATACGGATATCAGGAACATCACCGGCAGAGAGAAAAAGTCCATaACTGCAGGGAGGTAGTGGAATTCCAGTTAtctctaaaacaacaaaaaggactCTGGAGTGGGGCAGgaccagggctggggaccctgctgtactgttgTGTAGCTCTCCAGAACCAGGTCATCTTCACATGCTATATGAGATCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77717 lncRNA downstream 95932 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA downstream 95932 14353490 ~ 14401302 (-) True G62066
TU77567 lncRNA downstream 583068 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 668969 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 673694 13821748 ~ 13823540 (-) True G61927
TU77815 lncRNA upstream 157568 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 486192 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 877212 15423155 ~ 15423574 (-) True G62283
TU78228 lncRNA upstream 1934587 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 2070380 16616323 ~ 16617421 (-) False AMCG00020336
AMCG00020285 mRNA downstream 12257 14462413 ~ 14484977 (-) True AMCG00020285
AMCG00020284 mRNA downstream 56690 14439531 ~ 14440544 (-) True AMCG00020284
AMCG00020283 mRNA downstream 59419 14436796 ~ 14437815 (-) True AMCG00020283
AMCG00020282 mRNA downstream 69970 14405783 ~ 14427264 (-) True AMCG00020282
AMCG00020278 mRNA downstream 183233 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020287 mRNA upstream 8921 14554864 ~ 14564641 (-) True AMCG00020287
AMCG00020286 mRNA upstream 18831 14564774 ~ 14578838 (-) True AMCG00020286
AMCG00020289 mRNA upstream 88623 14634566 ~ 14639369 (-) True AMCG00020289
AMCG00020290 mRNA upstream 225041 14770984 ~ 14775208 (-) True AMCG00020290
AMCG00020294 mRNA upstream 568964 15114907 ~ 15128403 (-) True AMCG00020294
TU77709 other downstream 164827 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 365665 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 688901 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 688901 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 831649 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 1552957 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1552957 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1573046 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 1706845 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 1726508 16272451 ~ 16275573 (-) True G62421

Expression Profile