RNA id: AMCG00020295


Basic Information

Item Value
RNA id AMCG00020295
length 1650
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00020295
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15212090 ~ 15218030 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAcaacagagggagagggagagggagagggagagggagagagagaatgaagggAACAGGCTGCCCTTGCTTTTTTCCATATGGCTTCCTAAATGGGATGTAAGAACCTTCTTGTGTCAGATTGTATCCAGTAACCGGCAGCCTGTTGTCCCAACAGTGATCCATGTGGATGTCGAAAACAACAAGGCAAGACGTGAGATCCTGAAGTCGGTGCTCCAGGGAGCCCAGCCAGAAATGGAGAGCATAAAGTTCACCGTGGTGAGTGAACCCCCCGAGAACGAGCAGGACGAGGACTGTGAGGACGTGGGCGTGGCTTTCCTGAGGATCCGGGATGTCCTGGAGGAGAAGCGGGACCTGGTGGACCGCAGCCTGGACATTGTGGACGTGCAGGGCCACGAGGTGATGGGGAGTCTGACAGTCACACTGGAGGCCTTGGACGCCATGCAGTCTGTCCTGAAGGAGCCCTGAGAGCCCAGTTGCAGCTCGTGCACACACAATCCTCAGAGCCAGAGTCTATTTTTATATCTGATgctaatttgtatatatatttatactcgttttgtaattaatgaaatatgtatgtgGGCCATTTTACACATGGCGCCTAATTGTGAGCCCAATGCACAATACAGAATGAAAAAACCTGTCACGATGTAAACAGATTTTCTTGCGTCAATGATGCGCTTCCTCCATTAGCAGCGATAGAATTCGAtacacattatttgtgtaatACGTCGTGTGAAAGTCagttaatttttaataaaatatttctttTCAAAGTGCCAGCTCAGGATTTAAGCCCCGCGAACACATTCTAAACTAAAGTGTGCTGTTATCCCTAATCACTGGACTAAATGAAAACCCTGCTAAGCCTCATTAGGAGTTTTACACTATGACGATTTTATTGGAAGTGGTAGATGAAAATTGCCTGGATTAATGTGTTAATCCACCTCTTTAAAATGCTAATGTCCATTTTATGCACATTAAATCTCAGTATGCATTTTCTTTGATGCGTGCAATTTCTATCAATTAAATACAGTGGAGAGAAACAGGCACAGCACAGATTAGTTCTCATGCTTCAAGCAtggatttcttattttttgcgGTTAAAATTCCCCCAGAATGGAGAGGGAAAAAATGCTAATATGAGATTCGGCGGCCTTCTACCAAATATGAGAAATCTGCAGCACTGTTTGTGCtaaaagcttttgaaatgtcTCTACAGTGTATGCACAAAGATACAAGCATTTGacctgtgaaaataaataaatattaacaggCTCTCTGTCACAGCGCACACCTAGCTTTCTCAAAGATGTGTGAGAAGTTAACTGAGGATGAATAagtatgaataaaatacatcactCATTTAATTCAGTATATCCGCGCTGCTGTCTTCACGCCAAACCAGCATTTCCCGGATTATCATTCTGAAAGGCTGTCCTGCTGCAGACTGTAATGAATGACTCCAAGGATGTaggttaaatattttaacagtaaaGCCGTCAGGGGTTCCAAGAAATTCTGCGATGtgatcttttttctttgttttttctttaaatagggcttttttttttctcaaattgtCAGCTCCAAAGAGACCAATTTCAAccaatctgtttattttttttatattattttaaagcagtg

Function

GO:

id name namespace
GO:0009880 embryonic pattern specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77862 lncRNA upstream 178007 15032042 ~ 15034083 (+) True G62185
TU77769 lncRNA upstream 590390 14554856 ~ 14621700 (+) True G62108
TU77779 lncRNA upstream 633388 14577507 ~ 14578702 (+) True G62118
TU77775 lncRNA upstream 644652 14566719 ~ 14567438 (+) True G62114
TU77711 lncRNA upstream 810788 14345296 ~ 14401302 (+) True G62062
TU77943 lncRNA downstream 79717 15297747 ~ 15298181 (+) True G62251
TU77981 lncRNA downstream 115654 15333684 ~ 15335056 (+) True G62275
TU77989 lncRNA downstream 205177 15423207 ~ 15423573 (+) True G62282
TU78095 lncRNA downstream 846065 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 880956 16098986 ~ 16100810 (+) True G62398
AMCG00020296 mRNA upstream 12798 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020298 mRNA upstream 46096 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020291 mRNA upstream 220639 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020292 mRNA upstream 221660 14989030 ~ 14990430 (+) True AMCG00020292
AMCG00020281 mRNA upstream 739545 14467852 ~ 14472545 (+) False AMCG00020281
AMCG00020297 mRNA downstream 17653 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020299 mRNA downstream 26992 15245022 ~ 15247620 (+) True AMCG00020299
AMCG00020304 mRNA downstream 224881 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020306 mRNA downstream 542055 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020305 mRNA downstream 552985 15771015 ~ 15778141 (+) True AMCG00020305
TU77751 other upstream 742790 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1261043 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 1345527 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 1377258 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1861378 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 1596344 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2241130 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2710298 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2840528 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2849757 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile