RNA id: AMCG00020299


Basic Information

Item Value
RNA id AMCG00020299
length 432
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00020299
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15245022 ~ 15247620 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAGGTGCACAGTGGTTTCATGGAATAGCCACAGGACCGAGGTCACCCAAAGCAGCTGCGCTCACTCTGCCTCGGGACACAAAGCTGGGGCTCCTCTGGCCCCCGGGACAGGGAAGGTGTCTGTAGGATTCATGGACGGGTGCGCTGCCAGATGCTCGGCCAAGTCCTCACTGGAGACCACGTCAACCTCAGATCCACGGAGTCGTGTGGCCCTGTGGCCTCAGTGTGAGCCCCTGTCGTTGGCCACGTCCTGCAGCCTGCGCAGGAGCGCGGTCTGGTTCTCCTGGCACAGCCTCTTGGCCGGCGATTGGCCGCCCTCCTCCAGCGTGATGCTGCGCTTTTTGGTGGGCGTCTCCCCTGTCTTGATCATGCTGTTTATCTCCCGCAGGCGCTgtgcagggagggagagaggatggATGTCAGAGATA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77862 lncRNA upstream 210939 15032042 ~ 15034083 (+) True G62185
TU77769 lncRNA upstream 623322 14554856 ~ 14621700 (+) True G62108
TU77779 lncRNA upstream 666320 14577507 ~ 14578702 (+) True G62118
TU77775 lncRNA upstream 677584 14566719 ~ 14567438 (+) True G62114
TU77711 lncRNA upstream 843720 14345296 ~ 14401302 (+) True G62062
TU77943 lncRNA downstream 50127 15297747 ~ 15298181 (+) True G62251
TU77981 lncRNA downstream 86064 15333684 ~ 15335056 (+) True G62275
TU77989 lncRNA downstream 175587 15423207 ~ 15423573 (+) True G62282
TU78095 lncRNA downstream 816475 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 851366 16098986 ~ 16100810 (+) True G62398
AMCG00020297 mRNA upstream 38 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020295 mRNA upstream 26992 15212090 ~ 15218030 (+) True AMCG00020295
AMCG00020296 mRNA upstream 45730 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020298 mRNA upstream 79028 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020291 mRNA upstream 253571 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020304 mRNA downstream 195291 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020306 mRNA downstream 512465 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020305 mRNA downstream 523395 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020307 mRNA downstream 654892 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020311 mRNA downstream 755810 16003430 ~ 16011619 (+) True AMCG00020311
TU77751 other upstream 775722 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1293975 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 1378459 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 1410190 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1894310 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 1566754 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2211540 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2680708 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2810938 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2820167 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile