RNA id: AMCG00020304


Basic Information

Item Value
RNA id AMCG00020304
length 4074
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00020304
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15442911 ~ 15496323 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTAAGGTTTTATCCGTCCGCCGGTGGGAACCCCATTCCCGGAGAGCCGGCGAACCTGGATTTCTCCCACTGCCTGGGTTACTACAACTACAACAAGGTAGCTCTGGATTCCTCTGATAGTATCTTGAACTTGAGTTACATCAAAGGCATCCATAGTAAACAACCCAGGACGTGGCTGGAAGGCAAATTGAAGGCCGAGCATTGTGGTTCTGTACACGTCGGCCTTTGTAAGGACACAGAGCCGGGGCCAAGTCTGAGTGTTTCTGAAGCGCTCGTCACTGCGGTGCAAACATTCCACACGCCCAGCCTTGGAGATGAGGAGTTTGAGATCCCGCCCATCACTCCCCCTCCTGAGACTGAATCGGGGCTGGGAATGACGGAGGTGGGCTCGCCCTTCCAGGGGCTCCCTGAACCCCCGCCCACACAGGCCACCCAGTTCACCCCTCAGTTCCCCCCACAGAGCCTGGAGCTACCATCCATCACGATATCCCGCAACCTCATGGACCAAGAGGGCGCGATCCTCAACAGCAGCCTGCCCGTGAACATTTCTCAAGCACACGTGCACCAGTATCATCCCAACCACTCGATGGTCATGAGATCTGTAGTCAACATGAACAACCCTTCTGGGATGATGTCACGGAACCAGCTGACAACTATCAACCAATCCCAGCTCAGCGCCCAGCTTGGCTTGAACCTGGGTGGCCCCAACATGCCTCACACCTCCCCCTCGCCCCCTGCCAGCAAGTCggccaccccctccccctccagctCCATCAACGAGGAGGACCCTGAGGAGGGCAACCGGgtgATCGGGGAGAAGCGTCCTGCCCCGGACACCGGGAAGAAGCCCAAGAccccaaagaagaagaaaaagaaagacccCAACGAGCCGCAGAAGCCAGTCTCCGCATACGCACTGTTCTTCAGGGACACGCAGGCGGCCATCAAGGGCCAGAACCCCAACGCCACCTTTGGGGAGGTGTCCAAGATTGTGGCCTCCATGTGGGACAGCCTGGGCGAGGAGCAGAAACAGGtctacaaaagcaaaacagaagcTGCCAAAAAGGAATACTTAAAAGCTCTTGCTGCCTATCGAGCCAGTCTGGTTTCAAAGGCTGCTGCTGAGTCCGCCGAAGCACAGACCATACGTTCAGTCCAGCAGACACTGGCCTCCACCAACCTGTCCCCCTCGCTCATAATGAACACGCCCCTGTCCCAGCATCCCTCTGTCTCGGCTGCTGCTCAGGCCCTGCAGCAGGCTCTGCCCCGGGCCATCGCCCCCAAACCGCTGCAGATGCGTCTGTCCGGCAACCAGATCGTCACCTCAGTTACCGTTGCACCTCCGAACATGCCCACAAACATTCCCTCGCCCCTGATCAACCAGATGGGAGGGGCCATGGTGGGGGCGCCCCCTTCTGCGGTGGCACAGATGAGCCCACCCATGCAGCCTCCGCAGCAGCACCAGATGCAGcatttgcagcagcagcagcaacaacagcagcagcaacagcaacagcaaatgCAGCAACATTTGCAGCACcaacagctgcagcagcagcagatccaCCACCAACAGATCCAGCAACAGATGCAGCACCAACATTTCCAGCACCAtctccagcagcagctgcagcagcatcagcagcatCAGCAACATCAGCAGCATCAGCACCacttgcagcagcagcagcagcagcagcaacagcagcacctACAACAGCAGCAAATGCATCAGCAACTGCAGCACATGCAAATGCAACAATTGCATCAGCAGCAAATGCaacagctccagcagcagcagcagcaacagcaacaccaCCAACCCCACCAACCCCAGGCCTCCCCACCCCAGCACTCCCCAGGAACGCCGCAGTCTGTTGGGGGCTCTGCATCCATGGGCAGCCCCCAGCCCACCtcgcagcagcagcatcagtcCCAAATACAGGCCCAGGTGCTATCGCAGGTCAGCATCTTCTGAGCCTGAGTGAAACAAGAAGAGGAGGAAACTAATAAAAGCATCAGGCAAGGTTGCTTTTCTAAGTTGCACTTAAGAAGTGTGTAAGAATTATGTTTGACCAAGAACTGTCCATTGTTGTTGACGGCTATGCAGATATGCATAATGGGACAAAACACTGAAGCTAATTGGTCTATAAAATAGGCCATGTTatgaaaaagacaaagacaatgGGCGCGCACGcttgttgtttatattttctctaCTCTGTGGGATCGACTCGGGGCACATTACGTAAAGGACATGCTGTAATGCTCATTGGGAGACTTCTTACTCTTATTTAAGGGCAAAGCTTTATTTACAAGGGTGTCGGTTATAAGTTCTTCTGCATGAATGGACAAAAGCAAAGGGTGTGGACAGCAAGATCTGTGGAAGGCAGCTGTACTGTGTGTGGACAACCCGGATCAGAAGGTCACAAATCTTGAAGGAAACTATTTTAATGGAGGGGAACACTAGGAGGCATTGACTGGTATTACTGGTAGCCAATAATGTGTCCATGGGAAATGGGTGTTGTTTTCTCTTCACGGGACAGTATATTGTAAAGATTATGTtggggtttattttttttattcttttttttaaacatttcaagagCTTTCTCTGCATAGAAGCGGCCATCAGAACTTGCAATCCATCACTGCTTTGATTTCACTCCCAAAATACGGAGGATCAAGTGCTATCCAACTCAGCCCAGGCCTGGAAGAACTTGGAAGCAAAATTTCACATGTGCTTTTAGAGCCAGATGGAAGGATagactgaataaaaaaaaaaaaactaaaaaaaaactgctataGACCATTCAATTCTTTGTATGTCTTTAAACTGTGATGGTAATCTACTGTAGATGTCTCGAGGGGGGTAGGGAGACCCAGACGCAATTCTTCTTCCTAGTATCACATCAGGTTCATTCAGCCAGAATGCTCTCCAAAACAGATCACTCTTTTacatatttgtctttgttacCTCAGACTTTTAACGCTAtcataaattatgtttatattttttttaatttggtgtaaaaaaaaacaaaaaaaaacgaatattTTATGGTAAGTGTAAAATCACAGGCTCTATGTTGATGGTTTCAtgatcaatgtattttttaaacaatatggtTACTTGGTACCATGAActtaagaggaaaaaaaaaaaaacttgtagcaaaaaacattttgttgcaCTGTAAAAGCCAATTAAATAGGCGTGGGAACATTTAGTGCCAGCTGTAAAGAACTCctttaagaataaaaagaaaaagaaaaaaagatgtacatttttttcatatcaCGTTGTAAAGTTTTCATATGTGAAGCTTTAATATAACCATGAACTGTGGATTGCTACATCGCATAGTGcattttctgctgttttatacttttttatgaGTTATGATAGCAGTGATTaagttgtttgtattttgcttaacaaaaaatctgcttttttaTCTTGCtatagaataaatacatttcagtaaaaatcAAACTGTTTTTGAACTCTTACTAGGCAAATTTATTTGAAGATGAATTCTGCTTATTCAAGAACTAGCAGGAGACATTTCAAACCGGTGTGACATCAGCCATAATTTTGAGTCTGCTGTATGTTTCTTCTTGTGACCTTTGAAGTCTCCCTGTttggcattaaaataataattatcttttcaaaacaacttgaaaaacttaaaattaaaactctATTATTTCCAGTGGTATGTTAGCAGTAAAGGAGGATTTAAAAGGATACTTTTAAATCTTAAACTTATCAGGGAAATTCAGCTCTaggtgctatatatatatatatatttgtttgtttttgtttaagtttgCTGCACAAGTTGACCTATGTGCTGTTTTTCAGTTACTCCACCTAAAATGTCTCCATTACCCTGTTCAGATCGTAATAGACAGTGTGCAGTTTGAAGCCTCACTGACATTGATGTTTTTCCAGTAAgacattacatttccattaaagTACACAACTACCAATCCCTGTCCCTCCGCATACGTAACTGTCTATACAATATATCCTCTGAATCTGTTCATTATTGGGGGAGGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77989 lncRNA upstream 19338 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 107855 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 144730 15297747 ~ 15298181 (+) True G62251
TU77862 lncRNA upstream 408828 15032042 ~ 15034083 (+) True G62185
TU77769 lncRNA upstream 821211 14554856 ~ 14621700 (+) True G62108
TU78095 lncRNA downstream 567772 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 602663 16098986 ~ 16100810 (+) True G62398
TU78174 lncRNA downstream 919155 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 919155 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 1005461 16501784 ~ 16504823 (+) True G62480
AMCG00020299 mRNA upstream 195291 15245022 ~ 15247620 (+) True AMCG00020299
AMCG00020297 mRNA upstream 197927 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020295 mRNA upstream 224881 15212090 ~ 15218030 (+) True AMCG00020295
AMCG00020296 mRNA upstream 243619 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020298 mRNA upstream 276917 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020306 mRNA downstream 263762 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020305 mRNA downstream 274692 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020307 mRNA downstream 406189 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020311 mRNA downstream 507107 16003430 ~ 16011619 (+) True AMCG00020311
AMCG00020315 mRNA downstream 608045 16104368 ~ 16112905 (+) True AMCG00020315
TU77751 other upstream 973611 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1491864 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 1576348 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 1608079 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2092199 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 1318051 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1962837 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2432005 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2562235 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2571464 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile