RNA id: AMCG00020305


Basic Information

Item Value
RNA id AMCG00020305
length 4851
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00020305
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15771015 ~ 15778141 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAAACAGCAATGTAATAATTGAAAACCTGCAGAGCACTAAAGTGGCCGTGGCCCAGTTCTCTCAGGAGACGCGCTCAAACGGCAGCAACAAAGTCGCTGTCCCGGCTCTGATGGAGCAGCTTCTGgctttgcagcagcagcagatccaCCAGTTGCAGCTCATTGAACAAATCCGTCACCAGATATTATTGTTGGCATCACAAAACGCTGAAATGCCAGTGCCCTCCAGCTCTTCTCAAGGTACTTTAGGGACATCTGCCAATCCATTGACAACTCTCAGCTCACATCTCTCACAGCAGCTGGCTGCAGCTGCAGGATTAGCACAGAGCCTGGCGAGTCAGTCTGCCAGCATAAGCAGTTTGAAGCAACTGACTACGGCAGCACAGCTACCTCAGAGCAACCCTGGCAGCAACATGGTGCACCCGGGAAGTGGATCATCTCAGAGCATCGGGGCACTGGTGTCATCGGCAGTCAACAACCAGACCTCTGAAAAAAAACTGCCCACGCATGCTGGACCCCTGCACCCTCAGCTTGGCAACCCATCAGCAGCAAAGTCATCCACCCCAGCCTTCGGAATAGGTAGCTTGTTAAGCCCTGCATCAAACCCACTTCTACCTCAGCCTTCTCCTGGCAACCCCCTGTTCCCCAACCCACTGCCCAGCATCGGCACGACTGTGGAGGACCTGAACTCTTTGGCTGCCCTGGCCCAGCAGAGGAAAGGCAAGCCACCCAATGTGACCTCCTTTGAACCCAAAAGCAGCTCAGAGGAGGCTTTCTTCAAACACAAGTGCAGATTTTGTGCCAAGGTGTTTGGGAGCGACAGTGCCTTGCAGATTCACTTGCGGTCTCATACTGGAGAGAGACCATACAAATGCAACATCTGTGGGAACCGCTTCTCAACCCGAGGGAACTTGAAGGTTCACTTCCAGCGGCATAAAGAGAAATACCCTCACATCCAGATGAATCCCTACCCCGTTCCAGAGCATTTAGACAATATTCCAACCAGTACGGGCATTCCATATGGAATGTCCATGCCCCCAGAAAAGCCAATAACCAGCTGGCTGGACAGCAAGCCAGTTCTATCCACCTTGACAACGTCTGTGGGGCTTTTGCTCCCGCCAACAATCCCCAGCTTGCcacctttcattaaaaaagagGAGAATCATTCCATCTCAATCACCAGCCCTGCCAGTTCTGTTAGAAGTGACTCGGGTGCAGCAGAGCCATCTACAAAAAGTAACGATGGCATATCAGAAGAAGGTGAAGGTGGAGCCCTGCCTACCTCAAACGGAAGaacagaggagagcaaccagccCTTGAACTCCTTTCCCAGTGTGAGTATTTGCTCTGTTCAGGAGAGCACAATAGACCATGGCTTCAGCAGCAGCCCCCCCATGACCACCAATCCACTCATGCCACTCATGTCTGAGCAGTTCAAGGCCAAGTTCCCCTTCGGAGTCGTTCTGCAGCAGCATATCAGGATGCACATGGGGGGGCAGATTCCCAATACACCCCTCCCAGACAGCTATCCGGAGTCCATGGAGTCAGACACCGGATCCTTTGACGAGAGGAACTTCGACGACCTGGAGAACTTCTCGGATGATAATATGGAGAACCTGGAGAACATGGACAACATGGAGAACATGGAAAATATGGAGGACTGTCCTGACAGCAGCATTCCCGACACACCCAAGTCTGCTGACGCTTCTCAAGACAGCCTGTGCTCTTCTCCCACACCAGTCGAAATGTCAGGTATGGCTGGTTTGGAGCACCATGTAAAGATGGGGACCCAGAGGCTGGTGGAGGAGCTGCAGGCGAGCAGGGAGAAGTCGCTGGAGAATGGCTCATTCGAGGCCGACCGCATGACCAATGACTCGTCATCCCTGGGGGGGGACATTGAGAGCCAAAGCGCCGGGAGCCCAGCTATTTCCGAATCTACCTCTTCCATGCAGGCCCCTTCCCCCACCAACAGCGCAATGGCCTACCGAAAGTCCCCCAGTTTTGAGGAGAAGCAGCAAAGAGCTTTACAGATGGATCACATCAGTGCAGGAATCACCCAGTCCCCCTCCGGCGGCGCTTTGGATCTCACGTCTTGCAACCAGAAAGACCCCCTGAGCATGCTCTTCCCTTTCCGCGATCGGGGCACTTACAAGAACACAGCGTGCGACATCTGCGGCAAAACGTTTGCTTGTCAGAGTGCCTTGGACATTCACTACCGAAGCCATACCAAAGAGAGACCGTTTATTTGCACAGCCTGTAACAGGGGCTTCTCCACCAAGGGCAATCTCAAGCAGCACATGCTGACTCACCAGATGCGAGACCTGCCTTGCCAGCTGTTCGAGCCCTCCAACCCCAGCATCTCTTCCAGCCAGAGCCCTTCCATCCTCTCCGCCAGCTCTTTGTCATCCCTGATCAAGACGGAGGTCAATGGATTCCTGCACGGCTCGTCTCAGGACTGCAAAGAGCCAGTCACCAACCTCGTGTCATCCTCCGCCGCCACCTCCCCAGTGTTGCCCCCAGCCCCCCCACGGCGGACGCCCAAACAGCACTTCTGCAACACCTGTGGGAAGACGTTCTCCTCCTCCAGTGCCTTGCAGATCCACGAGAGGACCCACACAGGAGAGAAGCCCTTCGCCTGTACCATCTGTGGCAGAGCGTTCACAACTAAAGGCAACCTCAAGGTTCACATGGGAACACACATGTGGAACAGCGCTCCAGCCAGACGCGGCCGCCGCCTCTCCGTGGACGGCCCCATGGCTTTCCTGGGAACCAACCCGGTGAAATTCCCAGAGATATTCCAAAAGGATATGGCTTCCAGGGCAGGCAACGGGGACCCCGCGAGCTTCTGGAACCAGTACGCGGCGGCCTTTTCGAATGGCCTGGCGATGAAGACCAACGAGATCTCGGTCATTCAGAACGGGGGCCTCCCCCCCATGCCCGGGAGCATTGGCAACGGGGGCAGTTCACCCATCGGGGGCTTGACGGGTAGTTTGGAAAAGCTGCACAGCACAGAACCTAACGCTGCTCTGGCTGGACTGGAGAAAATGGCCAACACAGAAAATGGGACGCATTTCCGCTTTACACGCTTCATAGAGGACAATAAAGAGATTGTCACCAACTAGGATAGGTCTGAACAACATTTACCAGAccaacacaaacatgcaaacacacacccacGAAAGAATAacgaaaataaaagaaaataatagagcAGCTCTGGCTTGCCTTTGAAACTTCATGAACTAAAAAGTTAAGAAGAcatgctttttctctttttgtacaATGTACAACATCTATAGTTATAAGGAGCTTATTTATTAGTGAGTATAACCTTTGCTTGGAATCAAGTGGAAGCATTAACACTTACTTTACTCTTCTGTTCAATGGCCAGAATGGATTTGTTTGAGTGcttcaaaatgtgcttttgaGACTTTTAGCATTTGCAACCATATCTGGGTAGATGACCTTACCTTggcattaaattattttatatatgtagtaaatatataacataaccTTTGATGTTCATGTAATGCATTAGAtctgtaataaacaaaacaacaacaaatctgtaaataatgtaCACTGTTTTGTGCTGGAAGGCCTACCagctgtatattgttttatctttCTTCCATGAAAAATACTGAGACTGCAGACAAGGGGCAGTCCACCCTTAGTCCTTTTCCTATCAAcagtttttgatttttattatgaaaaaataaaactgcttctTCAGTTGTTTTGTAGAATTAACACTTTTGTTCCAAACTGTTCTGTGTATTGTGCTTTTTACTTCCTtcaccttttttgtttgtttgttttatttgttttagtgtttttgttgttattttttcttctgtaaagaTAAGAGGCACGAATCCTGTTAGAGAAGAAGAATGTCAAGAAGTGTTGTCTTGGTAGTTTAAACTGAGAAGAATATCAAAATGCCTTGTAGGTATGTTTCACATAGATAACGTGCTGGAATTCCACATTGCTGCTATGTATTAGCATCTTTGTTgacatcaaatattaaatttgTGTAGATGCTTCTGTAAATAATATCGGATGTGGAACAACAAatccatttaaacaaatgtacatacatCCCTCACAAGACAAAGTCCATCTTGACCAGGGGAcaaattatagttttgttttttgttttgtttttgtattaggTTTGAAAACCTTTGGACTGTTACATGCACTTTCTTTGAAAGTTGGAAGATCTTTAGGGTCCAGTTTCTCTACAGTTTAATACCTACTAACAACTAAGATACTGTAATTCTTTACTCTAATAATCAAATACATCAgttttgcaaaagaaaatgtggagtgattttttttttcttttcttttttttctttttgtgtgtttttctgggCTTAACTGGCATAATCccctggttttattttatgaaaatgcacTTGCTAAAGATTTATAGCcaaaatcattaaattaaaatatttatatgaagtTTTCAGGACAAATGCAACAATGCTTGCCTGTTTCAACACAGTGCAATGTCTATAAATGACCAGAGCTGGGTTTGTAAACCTTTCAATTCAaggcagttttatttaaaactaatagTGTATTACCGGTATACGGTAGAGACTAggcatttaaaattacttaatgattacgattttttttaaaatgttaccagtattattattattattattattatttatttatttatttatttatttgagtagTTGACAgtttaccatttaaaaacactttaattaattttgtgtttaaGTTGTCCTTTTGTAGAAGGGAGGATAGTTATGGTTAAATGAaaggatttattattaataataataataataatatta

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77989 lncRNA upstream 347442 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 435959 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 472834 15297747 ~ 15298181 (+) True G62251
TU77862 lncRNA upstream 736932 15032042 ~ 15034083 (+) True G62185
TU77779 lncRNA upstream 1192313 14577507 ~ 14578702 (+) True G62118
TU78095 lncRNA downstream 285954 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 320845 16098986 ~ 16100810 (+) True G62398
TU78174 lncRNA downstream 637337 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 637337 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 723643 16501784 ~ 16504823 (+) True G62480
AMCG00020306 mRNA upstream 270 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020304 mRNA upstream 274692 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020299 mRNA upstream 523395 15245022 ~ 15247620 (+) True AMCG00020299
AMCG00020297 mRNA upstream 526031 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020295 mRNA upstream 552985 15212090 ~ 15218030 (+) True AMCG00020295
AMCG00020307 mRNA downstream 124371 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020311 mRNA downstream 225289 16003430 ~ 16011619 (+) True AMCG00020311
AMCG00020315 mRNA downstream 326227 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020318 mRNA downstream 371179 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020314 mRNA downstream 399467 16177608 ~ 16180913 (+) True AMCG00020314
TU77751 other upstream 1301715 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1819968 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 1904452 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 1936183 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2420303 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 1036233 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1681019 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2150187 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2280417 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2289646 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066334 True 6552 mRNA 0.44 3 NC_007118.7 37377335 ~ 37392172 (+)
grasscarp (Ctenopharyngodon idella) CI01000065_00390457_00395371.mRNA True 4454 mRNA 0.45 3 CI01000065 390457 ~ 396151 (+)