RNA id: AMCG00020307


Basic Information

Item Value
RNA id AMCG00020307
length 2117
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00020307
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15902512 ~ 15908316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGAAGCGCAGTGCTGAGGGACAGAGGGGGATTTCACCAGGGGCCGGCACGCTGGCAAACAGAGAGGCCAGCTCATTTTCACATTACAGATCCAGAGGGGTGAGAGCATGGTTTGCCACCAGACACCCTAGCAGGAGAGCACAGGAATCTCAGCCCAGGGGGTGGCCCAGACTGTTTGCAATGGGAGATTCCTGCGATCCCGAGCAGAGCGTTCCCAGCCTGGCAGAGGACAATGGGGGAAGCCAGTCTGACAGTAGGACACAGCAGCAGCTGCCCCAGGCCTGCGCTCCAGCTCAGCAACACTACGAGCACTGCACAGATCTAGtaGATGACTGCAGCGCTGGCCCCAGCTCCACCATGACCACGAAGCAGCTGCAGGAGTACTGGCGGGAGATGAAGTCGCACAGGAAGCCCGTCAAGCTGCTGTTCGAGATTCCCACCGCCCGCATCGTGGAGCTGCCTCTCTGCAGATATGTGATGTACCAAGTGGTGGTGATCAAGTCGGGCAGCTATGATGCCAAGCAGGTGTCCATCGAGAGGCGCTACTCTGACTTTGAGCGGCTGCaccaggagctgctgcaggactTCAGCGAGGAACTGGAGGAGGTGACTTTTCCCCGAAAGAAGGTGACGGGCAACTTTGCGCCGGAAATCATCACCGAGCGCCGTGCCGCCTTCAAGGACTACTTGGCGCGGCTGTCGTTCCTGAACTGTGTGCGCCGCTCCCCAGCCTTCCTGGCCTTCTTCACCCACGACGAGCTGCGGCTGGCCCATAGCTGCCTGCGGGGGGGGCAGTATGCCCGGGCACTCCAGGTCCTGCTGCCCGTGCTGGATCTGCAGGAGAAGCTGGTGCAGCACAGCCCGGTTCTGTTGGTGCCTACGCTATGTGCTGTGCTGGTGTGCCACCGAGACCTGGACGACTCTGCCAGTGCCTTCTCCATGGGTGAGCGGGCCCTGGCGCTGACCCGCAGGGTTCACAGACACCTCTACAGGGCCCCCCTGCTGGCCACACTCATTGACCTGGGCTACGAGCTGGGCCGGCCCATTGCCGTGCTGCAGGAGGAGCTGCAGCGTCTCCAGGACAGCCTGCGAGGGCGTGTGTCCCAGCTCTCCCTCAAGGAGCTGGTGGTGCAGGAGTTCACCTGATACTGACCACACCAACGCTTCCTCCCTCCCCACGCCCTGCCCCTCACCCTGCTGCCTCAAAtagacacaggcacagacacactctGCTGGTCTCCCCTGTTTACCTTCTTACATGAGCATGAGCATGTGCGcgcacacacatacgcacatacgcacacacgcacgaacacacacacggacacaggaCACATGGACACACGGACACGCGCACATACGCTCACGCATTCTACAACTATAGCCAAGCCTTTGACCAGTTTTATGCAGGTCTGATgccaaatatttttatatatattgctgaCACGCATCATGTAAGaggcaaataaaaacagactgcaGCCTACCTTTTGGCAACAGTGATGTTTTTAGAGGGAGCACGCCTAGCACACACAGATGGCTGGAGTTAGGCCATGCGTTTCCCCCACCAAGTGCAATAGCAGAATTCAGACCGCCCGTGTCCCCCTGCAGGACAGCAACACCTGTATAATCGTGCctccctctcacacactcagCAGGCCAGCAGCTATTTGCAGATGCATACATGTACACGAAGTTAGGCTGAAGTCTTCTAGATTCACCACACGAGGGGGCTGTTGTATTTACTTAGATGTTCCCTGCAAAGCTTCAGCGCGGTGAACTGTTAAGTGCAACTTTAATTGCTTTTTGACTCCCTGGAatttttacaaataaaccaGTTAATCAAACACTTATCAATGTAAGGATTTCACAtgtgttttataatacattCCTGACTGTGCTGAAGGAAAGACAAGAATGCGGGAAGttaaatatctaaaaaaaaactgaataaaaatgaaataaaataaaaatgtaatttttcacagaTAAGCTTCTTGTTACTGATCTGCTTACTCAGATGCTGTGCACACTAATCTGAAATATAGGTGTGACAATTAGAAAAGCAGTTTATTAGTTCCCCACAGTTTGTTAAACCAATGAGCTACACATGAC

Function

GO: NA

KEGG:

id description
K17931 SNX20; sorting nexin-20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77989 lncRNA upstream 478939 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 567456 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 604331 15297747 ~ 15298181 (+) True G62251
TU77862 lncRNA upstream 868429 15032042 ~ 15034083 (+) True G62185
TU77779 lncRNA upstream 1323810 14577507 ~ 14578702 (+) True G62118
TU78095 lncRNA downstream 155779 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 190670 16098986 ~ 16100810 (+) True G62398
TU78174 lncRNA downstream 507162 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 507162 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 593468 16501784 ~ 16504823 (+) True G62480
AMCG00020305 mRNA upstream 124371 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020306 mRNA upstream 131767 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020304 mRNA upstream 406189 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020299 mRNA upstream 654892 15245022 ~ 15247620 (+) True AMCG00020299
AMCG00020297 mRNA upstream 657528 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020311 mRNA downstream 95114 16003430 ~ 16011619 (+) True AMCG00020311
AMCG00020315 mRNA downstream 196052 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020318 mRNA downstream 241004 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020314 mRNA downstream 269292 16177608 ~ 16180913 (+) True AMCG00020314
AMCG00020319 mRNA downstream 324265 16232581 ~ 16236548 (+) True AMCG00020319
TU77751 other upstream 1433212 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1951465 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2035949 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2067680 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2551800 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 906058 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1550844 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2020012 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2150242 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2159471 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile