RNA id: AMCG00020308


Basic Information

Item Value
RNA id AMCG00020308
length 3548
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00020308
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15893227 ~ 15901574 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATCCCCGTAGATACAAATAAgtgttggtttgtgtttttttaatctatggCGACAGGTTCGTTGAGAGGACGCGGAAAAGGCCGAGCACCGTCTGGCTTCGGCTCTGAGTGATGCGCAAGGATCTCCACAGCTGCGCACTGGAAGATGAGGGATGTGTGCCCAGCGCCTGGTCCTGAGGCAGAGACAGGAGCTGGTGAGGGTGCTGAGTTGGGGTGGAGTGGAGGGGCTGGAGAGTGTGCTGGACATCCTGCTGGCCTGGGATGCTCTGCAGTGGGAGGACTATGAGAGCCTGCGGACACTGGGGCGGGCTTTATCTCTCACCACCCGTGAACTGCTGGACCTGCTGTACGCCAAGGGGGAAGCTGCCTGTGCATTGCTGCTGGCGGCTTGTAACCAGGCCCTTCCGGATGCCCAGAAAGCAGGCCTGTCCCTTGGGAGTTATGGGCCTCCCTCTGTGGTCATGGCCCCACAGCCCCCTCTTAGCAGCGCCCAGGTCCTGCAGAGGGACCGGCCCCAGGTGGTGAGGAAGCTCCGGGGCCACACTGAGGGTGTGCTGGAGACCCTCTTGGAAGCAGGCTGCTTCACGCTGTGCGACTGCGACGAGGTGCGCCTCCCCATACATACCCCCTCACAGCAGGCAAGGAGGCTGCTGGATCTTGTGAGGTCTAAGGGGGAGCCTGCTGCGGAGGTCCTGTTGTTGTACGTTCAGAAAGCAGGAAATGGAGCTGCGCTGTCCCTCCCTGAGGACAGACACCCTGCAGATGTGGTTTACCAGGCATTCCAGCACAAGCTGCGGAGCATGGTGGCGGCCCAGTCATGCTTCCTCAGCACGTACGGCGGCATGGAGAACATCTCTCTTGAAGATGTCTATACCGAGGGGGTGCTGGAGGGCTCTGGCGAGGCACAGTGCCCCCTGGGGCTGGAGGATCTGCTGGGGTCAGTGGGGACAGTGAACGAGGAGGCGGACACTGTGCTGGTTGCAGGGGAGGCTGGCAGTGGTAAAAGCACTCTGCTGCAGCGGTTGCACCTGCTGTGGGCCAACAGGGTGGCACTGCAGGACTACCTGCTGCTCTTCCCCTTCAGTTGCCGGCAGCTGGGCGCCCTGGGTTGGAAGCTGTCCCTGCGCGAGCTGCTCTTCCAGCACTGCTGCTGGCCAGATGGTGATCAGGACCTGCTGTTTCGCTTCATCTTGGACCACCCAAACCGTGTCCTCTTCACCTTCGATGGGCTCGATGAGCTTAATCCACGCTTTAGTGATGACCTCCGTCACTGCTCCCCCACCCAGCCTGCCCCCCCGTCCACCCTGCTCTTCAACTTGCTACAGGGAACATTGATGAAGGGTGTGCATAAGCTGGTGACCAGTCGACCCGAGGCGGTGGGCCCAGTTTTGAGGAAGTACGTCCGCAAAGAGGTCTCCCTGAGGGGCTTCTCTCAGGAGGGCATCGGTCACTTTGTCAGGAAGCACCACAGTGACCCTGCCATCGCTGCCCGTGTCCTAGACTCCCTGCAGGCCAACACTGCCCTGCTGGGCATGTGCCATATCCCTGTCTTTTGCTGGATTGTGTCCAGGTGCTATGAGGAGCTCCTGGGGCGAGGGGTGGGCAGCCCGCAGACCATTACGGATGTCTACCTGATGATCCTGCAGCACTTCCTACAGCATTCCTGCCCTCAGCAGTGCCTCCTTGGGCCAGATTGGTTGCAGGTTCATGTGGACACAGTCCTGCATCTCGGCCAGCTGGCCCTGTGTGGCCTGGTGTCCTCCTGTTACGTTTTTTCAGCTTTGCAGCTGCAGCAGTACAGTGTGACCGAGGAGGACATCTCCACCGGCTTTCTTGTTCACAGCAGGAACCTCACCCCCCCAGGCAGCCCTCACTACGAGTTCCTGCACGTCACAGCGCAGTGCTTCTTTGCTGCTCTCTTCATTGTCctgaacaacaatatagagaattCCACCATCCCCAAACTCTTCCACCCACGGAATAAGCCACTGTCTGCCCTGGCCAGCATGTGCCTGGCACCCTGCCTGCACCCCAGCTCCGTCGGGGACGCTGGTGCTGAGGGGGACATCCAGGCAGCAGAGACGATCAACCTGCAGATGACTGGCGCCTTCGTGGCCGGGTTGCTCTCTCGACGCCACTGTGACCTACTAGCTCGGTGCTCCCTGGGCCCCATCCTGGACAAGAAGCGCAAGCAGGTGGTGAAGAGCCTGTGCaaagggacacagagacacttcaGGTCCATCCCTCCTCCTGTGGAAGGAGAGAAGAAGAGCATGCACGCCATGCCAGGGTTCGTCTGGCTGGTGAGGTGCATCTACGAGATGCAGGACTGTGGCCTAGCCAAAGAGGCCGTGGCCCGGCTGGACGTGGAGCACCTGAAGCTCACGTACTGTGGTGTGGGCCCAGTGGAGTGCAGCGCGTTGGCCTTCGTCTTGCAGCACCTCAGGGCTCCCATTGGGCTGCAGCTGGACTACAATTCGGTGGGCGACGTCGGGATTGAGCAGCTGCTGCCCTGTCTGGAGATCTGTCAGTCAATTTACCTGCGCCATAATAACATTTCTGATGTGGGAATCTGCAAGCTGATCGATAAGGGAATCCAGTGTGAGCACTTTCAGAAAATTGCGCTGTTTAACAACAATCTGACAGACGAgtgcacaaaacattttgcaaaactCCTCAGAATGAAGAAGAATTTTCTCTCATTGAGGCTGGGCAACAACCACATCACAGCAGCCGGAGCGGAACAGCTGGCAGAGGGTCTGAGGGAGAGCCGGTCTCTGCAGTTCCTGGGGCTCTGGGGCAATAAAATTGGAGACAGAGGCACAGAGGCACTGTCTCGAGCCTTGCAGGACAGTCCCAGCCTGGTGTGGCTGAGTCTGGTGGACAATGGGGTGGGCAGTGCTGGGGCACGGGCTCTGGCTGCAGTGATTGAAAGGAGCAACACCCTGCAGGAGCTCTGGTTAACCAAGAACTCCATTAGCAGAGATGGGGTGCAGCACCTGCTGGAAGCGCTGCAGAAGAACACCAGTGTGAAGTCTATCTGGTTGAGAGGTAACAGTCTGACTGCAGATGAGGAAGAGGAACTCGGCCAGGTGGAAAGCCGGCTGACATTCTGAGAGCGGCTCTTCTCCATCAGGGGCATTTTTACTCTTCCATttctgtaaacatttattttctccatgtctgaattttattattaatttataggGTGAACTGATATCATTTTACTCCAGCTTATGTCCAGATGGATTCCTCCATGGTCTGGGTGGTTGCTCTCAGATCTCagctctattattattattattattgttgttgttgttgatgttgttattttgttgaaGTTGCTGCCTCAACCCCAAGGCATgatttgtaattgtatgtatgaGTTGGTGGTTGTATTATTTGAAGCTGGATAAATGTTCTTTTATCTTATCGTGATTTATCATCAGTGATCATCATTGAGCTGTGTGAATAAAAGGTGCGGATCAGTTCCCGAAATGTCATGATGCTACTAatcaaagaacaaaaataaatgaatgaatatgta

Function

GO: NA

KEGG:

id description
K10165 NOD2, CARD15; nucleotide-binding oligomerization domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 469653 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 859151 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1125664 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1491925 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 578956 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 714749 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 714820 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 714820 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 767323 16668897 ~ 16669511 (-) True G62580
AMCG00020310 mRNA downstream 1179 15868506 ~ 15892048 (-) True AMCG00020310
AMCG00020303 mRNA downstream 572951 15308859 ~ 15320276 (-) True AMCG00020303
AMCG00020301 mRNA downstream 585731 15270793 ~ 15307496 (-) True AMCG00020301
AMCG00020302 mRNA downstream 623801 15269069 ~ 15269426 (-) True AMCG00020302
AMCG00020300 mRNA downstream 627465 15246273 ~ 15265762 (-) True AMCG00020300
AMCG00020309 mRNA upstream 20719 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020312 mRNA upstream 110491 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020313 mRNA upstream 165839 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020317 mRNA upstream 187382 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020316 mRNA upstream 197572 16099146 ~ 16102680 (-) False AMCG00020316
TU77709 other downstream 1560820 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1761658 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 2084894 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 2084894 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 2227642 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 197326 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 197326 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 217415 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 351214 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 370877 16272451 ~ 16275573 (-) True G62421

Expression Profile