RNA id: AMCG00020311


Basic Information

Item Value
RNA id AMCG00020311
length 2067
RNA type mRNA
GC content 0.58
exon number 16
gene id AMCG00020311
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16003430 ~ 16011619 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgggcaagaaacacaagaaacacaagTCGGAGAAACATACCTACGGAGCCTTGCATGGGACTGGACGCTCTCTGTTCGTGTCACACCCAGGGGAGTATGTGGAGAAGCCGCTGAAGCTGGTCCTCAAGGTAGCCGGGACCGAGGTGACCGAGCTGTCCACCGGGAGCTCCAGCCACGACCCCGCCGCCTTCGACGACAAGGCCGATCACGACAAACACaaggacaagaagaagaagaaaaaaaagaagggagagaaagagaaacacagcCCCGACCCCGCtgtggaggagaagaaaaagaaaaagacaacCAAGAAGAAGAAAGGTCAGCAGTCGATGGAGACGGATGCAGACGAGCAGGAGAGAAGCCAGACCCCTGTCAGAGCAGAGCTGTCCCCAGACAAGCACATCAGCTCCCCCATGGCCAAGATGGAGGGTGAGTCCCCCGCAGTCTGTGTGCGCCCGTGTCGCAGCCTTCCTGCaggctctccctctcccaccctGACCCGTCTCACCCTCCCGCTGCTCAGGGAGTCGGCGAGAGGCACGGATTTCATACGGCACGGAGATTCGCTTTCCAGAAAGAGCTGTCCCCCCTGCAGGAAGCTCTCACCCAGCTCATCAGGCAGCTCCAGAGACTTCATCGCGCCTGGGTACTCCCTGATCATTAAGCGGCCCATGGACTTCAGCACCATGAAGGAGAAGGTGAAGAGAGAGGAGTACCAGTCCCTGGAGGAGCTCAAGGCGGATTTCAAAATCATGTGCGAGAACGCGATGATCTACAACAAGCCGGAGACCATCTACTTTAAGGCTGCCAAGAAGTTGCTTCACTCCGGGATGAAGATCCTGAGCCAGGAGCGTCTGCTGAGTCTGAAACAGAGCATCGAGTtcatggccgacctggagtgtaccAACAAGCAGGGTGAGCTGGGGGATGCGGCAAAGGAAGGAGGCCCCAGCACGGAAGAGCCCAAAGATGGAGAGGAGCCCATGGACACCTCTGAGCCCTTGAAAACACCCAGCAAGGCAAATAAGGACAGCAAGAGGCCCGACAGGGACTCCAAGGAGGATGTGGAGAGGAGCAGCAGCCTGGCggagaaggagctggagcagatcCAGAAGCTGATCGAGGAGTCGGGGGGCAAACTGACCAGCAGAGGGTTCCAGAGTGAGCTGGAGGTGAGGCTGGTAGCCACACCAGGTGGAGGGGAACATGGGTGGGGCAGGAAGGGCGATTCTCTAGAGGATAGTATGCAGTTTGAGAGACGGAAGTCTGATGGGACCACCACGCTGGGCATCCTAAACCCAGCTGACTTGGCAGTGGGAGAACCAGGATACTGTCCTGTGAAGCTAGGCATGATGATGGGCCGGCTGCAGACTGGCATAAACACCCTGCAGGGGTTTAAAGAAGACAAAAGGAACAAGGTGACACCAGTGTCCTACATGAATTACGGGCCGTTCAGCTCTTACGCTCCGATTTATGACTCCAGTTTTGCCAACATCAGTAAAGACGATTCGGACTTGATCTACTCCTTCTATGGGGACGAGCCCAGTGTCCAGGGCTCTCAGAGcatcCAGGAGTTCCTGTCGAAGGCAGACCAGTACATGAGCAAGATGGCAGACAACATAATCGAACCCGAGGCTGGCTGCAAGGACAGCCTGACTGCGCTAAGCTCTGTGGCTGGCTTGGACCTCGAACCCCAGCCCTTGGACTCTGAAGAGGCTCAAAAGTTCCAGAAAAAGCTGGACGAGACGACGCTGCTACTGCGGGAGCTGCAGGAGGTCCAGAACGAGCGGCTCAGCGCCAAGCCTCCCCCCAACATCATCTGCCTGCTCGCCCCCAGCGCCAAAGAGCTGCTGCTGGCGGAGAAGGTGACCGGAAACCTGAAGGAGCTGGCGAGCCGCGTGTCCCCGGGCGACCTCGCCAGCCTGTACGGCATCAGGAAGGCTATGGGGATCTCCCTGCCAGCCGGGCTGCAGGAGGATGGCCTCATCGACCTCACCACAGCTGCTGCGGAGTCTGTGGGGGTGTGTGCTGGCGGACAAGAAGAGGTCCCTGTGATATAA

Function

GO: NA

KEGG:

id description
K11723 BRD7; bromodomain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77989 lncRNA upstream 579857 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 668374 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 705249 15297747 ~ 15298181 (+) True G62251
TU77862 lncRNA upstream 969347 15032042 ~ 15034083 (+) True G62185
TU77779 lncRNA upstream 1424728 14577507 ~ 14578702 (+) True G62118
TU78095 lncRNA downstream 52476 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 87367 16098986 ~ 16100810 (+) True G62398
TU78174 lncRNA downstream 403859 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 403859 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 490165 16501784 ~ 16504823 (+) True G62480
AMCG00020307 mRNA upstream 95114 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020305 mRNA upstream 225289 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020306 mRNA upstream 232685 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020304 mRNA upstream 507107 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020299 mRNA upstream 755810 15245022 ~ 15247620 (+) True AMCG00020299
AMCG00020315 mRNA downstream 92749 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020318 mRNA downstream 137701 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020314 mRNA downstream 165989 16177608 ~ 16180913 (+) True AMCG00020314
AMCG00020319 mRNA downstream 220962 16232581 ~ 16236548 (+) True AMCG00020319
AMCG00020320 mRNA downstream 242874 16254493 ~ 16274574 (+) True AMCG00020320
TU77751 other upstream 1534130 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2052383 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2136867 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2168598 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2652718 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 802755 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1447541 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1916709 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2046939 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2056168 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile