RNA id: AMCG00020312


Basic Information

Item Value
RNA id AMCG00020312
length 5376
RNA type mRNA
GC content 0.50
exon number 25
gene id AMCG00020312
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16012065 ~ 16036730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGGGCCGGTGCTGAAAGAGCTGCTCAGCTGAGCGTGGTGCTGCACGGAGCAGAGCGGCCGAACTGTGTGAGGAGTCCAGGATCCTGAAACGTGGCGGGAACCTTGACCACCCGTCTCCCAGCATTCCCTCCCCAGCCCTGCCCTCCCCTGCCTGCTGCTTCTGGGCTCAGTGATGTTGCTGAGGAGCACATAGTCACTGGCAGGAATGAACTGTGCCTGCCTGAGACCTGCCCTCTGAAATCTGCCTGAGACACGCAGAGAAAGCGAGAGACACGGGGAAAGCTGAGAGAGACAGCTGAGGCTGAAGAAGTGCTCAAGATGTGAAAGTGCCGGAGAAGTAAACAACCAAACAACAAGTGCACCTGAACCGCACCATACCTTCTGATAAGGgagaaaccaaaccaaaaaaacagccacataaaaacaaaaccggaTTCACTGCACTGGAattataactaatatatatctgtgtgtgtgtgtatgtatgcatgtatctTGATACATAAACACTGGTGTGCACCTGATTCTCACAAGTCCTACCCTGCCTGCTATGTTTCGCCCCGTGTGAGCCGAGCAGCACCATGCCAGCCAAGGGGAAGTACATGTTGAATGGCCAGGAGCAGGTGGGGCTATACAAGCAGTACTGTTACATCAGACAGTACcagctgctggtgctgctgttgGGCATCTCCATCCTGTCCTGCGTCGTGCTGCTCGTTCTCTTCTTCGCCTTACAGCTGAATGCCCTGGAACACCCTGCCTTCGTGGGCGTGGTGAGCTGCGGTCTGGCCCTGCTGGGGGCCGTGTTCGCCATGGTCTGCTGCACCGAGACGCTGTTCCAGAGGTGGATGAGGCTGCTGGCCGTGGCTGTCTGGGCCTGCCTCCTCATCATGGGCTTCGTCTTCACCCTGAGCGGAAGTGTCACCCGGGCTTGGGACCAGGTGCCCTTCTTCCTGTTCACCATCTTCACAGTGTACACTATGATGCCGTTCCAGATGCGAGACGCGGTGATTCTGAGTCTGGTGACATCGGTGTCCCACATCGTTGTGCTCAGCATCGTCCTCACCACCTCCTCAAAACCCCCCACCTTCCTCACCTACCAGcTGGTGTCTAATGGGGTCATCTTCCTGTGTGGGAATGTGGTGGGCGCCTTCCACAAGGTGCTGATGGCACGCGCCCTGCGTCAGACCTTCCTGGACACCCTGAGCTGCCTGGAGATCCGCATGAAGCTGGAGATCGAGAAGAGGCAGCAGGAGAACCTGCTCCAGTCAGTGCTGCCGGTGTACATCTCCATGGAGATGAAGCTGGCCATCATTGAGCGGCTGAAGGAGAGTAAAGACGCGCAGCAGCGGCTGGTCAAGGACAACAACTTCCACAGCCTGTATGTCAAGAGGCACGAGAACGTCAGCATCCTGTACGCCGACATCGTGGGCTTCACACGGCTGGCCAGCGACTGCTCACCCAAGGAGCTGGAGAATGAGTGCATGAGGATAAAGATTCTGGGGGACTGTTACTACTGTGTATCGGGCCTGCCGGTGTCCCTGCCCAGGCATGCCAGGAACTGTGTGAAGATGGGGCTGGACATGTGTGAGGCCATCAAACAGGTGCGGGAGGCCACAGGCGTGGACATCAACATGAGGGTGGGCGTGCATTCTGGCAACGTGCTATGCGGTGTCATCGGCCTGCGCAAGTGGCAATTTGATGTGTGGTCACATGACGTGACCTTAGCCAATCACATGGAATCAGGAGGGCTGCCGGGGCGTGTCCACATCACAGAGGCCACCCTGAAACACCTGAACAAGGCCTATGAGGTGGAGGAGGGCAACGGACATCTGCGGGATCCATACCTGAAGGAGCAGAACATCAACACGTACCTGGTGATCGACCCCCGGTCGAAGGAATCATCTGTGAGCAGCCAGCGGAAGACCAAGCAGTGCCGGCATAACGACGGGCTGAAGATGCGAGCGTCAGTGAGGATGACGCGGTACCTAGAGTCCTGGGGCGCCGCCAAGCCCTTCGCTCACCTGCAAAGCCGCGAGCTCTGCACCCCAACGGGAAACTGCGACCTGCACGCCAATGGGAAACTGCGCAAGGACATACCCTTGCGTTCACTCGTCTGTCCAAGGACAACAGACAGCCTGGATGAGTCCCTGGAGGagcccttctctctctccacctctccatTCGTCAGCTATAAGAACAGGTCTCAGAAGAGCAAGTTCGACGAGGAGCTTTACAATAAGATGGTCATGACCATCGATGGACTGAGCTCCAGCAAGCAGTGGATCAAATCAGAGGAAATGTTCAGCTTCACCTTGTGGTTCACTAAGAAGGAGCTGGAGAAGCAGTATCGCGCCATCGATCTTCCTGGCTTCAAGTACTACATCGGCTGTGCCAGCTTCATTTTCCTTTGTATCTTTGTGGTCCAGATGTGTCGGTTCTTCCCCGAGCGGCTGGCGTCCTGTCAGTGGCTGAGCACTGTGTCCGAGGCCGTGGGCAAGAAGCCATTTGTGCGCCTCCCTCTGGCCGTGGCCTCCACTGCCGTGATCCTGATTATTGCCGTCATCAATCTGTGCTTCTTCCCCTTCCCAGAGCTGTGCAATAACACTGCTGCCTTAACCAATGCCACAGAGTTTGAGGCATCCCATGGGCTCTTCTTCATGCCGTACGTTGTGTACTGCTGTCTCCTGGGCATTGTGGCCTGCGGGGTGTTTCTGCGAGTCAGCGTGGAGCTCAAACTCATCTTCCTGGTGCTGGCGTCCATTGGTTATTACATCATCATCCTACAAACCCACAGTAATCTCTTCGAATGCTATGGCTCTGTGCTGTACCCCAATGGAACCAGTGACACAATTCTGGAACAGTCCGGCCTCATGAAGCACCCAAAGGTGATGAGCTGTGTGTATATCTCGCTCTTCCTCATCACCATGGTGTTTCTAACCCAACAGACTGAATACTACTGTCGCCAGGACTTCCTGCTGAAGAACAAGAACCGCCAGGAGCAGGACAAGATCGAGACCATGGAGAACCTCAACCGGCTGCTGTTGGAGAATGTGCTGCCCGCCCATGTCGCCTCCCTCTTCGTAGGAGAGAATAAAAAGAACGAGGTGGGATTCCTCAAAAACAGTTTACTTACTGAAAAGTATAAGGACCTGTACTACAAGTCGTACGACTGTGTGTGCGTGATGTTCGCCTCGGTGCCTGACTTCAAGGAGTTCTACACGGAGTGCGACATCAACAAGGAGGGCCTGGAGTGCCTGAGGCTGCTGAACGAGATCATCGCCGACTTTGACGAGCTCCTGTCGAAGCCTAAATTCAGCGGGGTGGAGAAAATCAAAACCATCGGCAGCACGTACATGGCAGCAGCAGGGCTCAGCGTTACCGCCGGGCAGGACAACAACCAGCCGGCGCAGGACCGCGAGAGGCAGCACACGCAGATCGGGAACATGGTGGAGTTTGCCATTGCCCTGGTGGGGAAGCTGGACGGCATCAACCGCCATTCCTTCAACAGCTTCCGGCTACGTGTGGGAATCAACTACGGCCCAGTGATCGCAGGGGTGATCGGAGCCAGGAAACCACAGTACGACATCTGGGGGAACACGGTCAATGTGTCCAGCCGAATGGAGAGCACTGGAGAGCTGGGCAAAATCCAGgtgaCGGAGGAGACGTCCAACGTGCTGCAGAAGCTGGGCTACTCCTGCGAGTGCCGGGGGATGATCAAGGTGAAGGGGAAGGGCGAGCTCAGGACGTTCTTTGTGTGCACGGACATGAGTAAGTCCCAGGGCATCGCTCTGAGCTGAGAGCGTGGGTCACTCGCTCCCACTGCCACTGCCTCACCCCAGACACTTGAAGAAACAACCTACacttttattcagatttttttttttttacttaaattaaattaccatATACCTAGTATTATTAATAAGGTTCctctcattaaaatgtttttttttttggtggctgggggaggggggataaaaaaaaaaagtcacctgTCGAAGGAGCAGATGATGATGGAGATGAAGTACCGCCCCACAGAAAAAGGTTAAGATTtctactgttttttatttttattttattttattctcctcTGCGCTGCATTGAAGAATCCAGCACTACCATTTACAAGAAGGTGGGGAATTGACTGAAATATTAGAAACTGCAGCAGACTCAGTATTTGCCTAGAGTGACAACTTAGTTTTATTTAGCTATTcgattgcattttattttaattgtaaattcttgtcttgtatatattttggaGCTGCTGTTTTGCACTTACTTGAAGAATAAAGGAGCGTTTCagacaggtttttatttatgttcacaGGTCAAACATTTCCTTgtctctgtattttgttttgttttgttctttttgttcttaAAGCAAGTTGTTGTTTAGTGTGATACAAACGCCTAATTCCCAGATCTGGAAGCCAAATAATCTGAATGCTGAACGGCCCGCTTCGATTATGATGCGCACTCTGTGTAATTACTGTGTAATGTGTTGTTTAGTCGTGTTTCgtaaaaaaaaggtttcattATCTGAAACCAAGGCTCTTATTTTCAGTCACCTGCAAAATTCTCACTGATAATGCCGTGCTTTTTCCCCAAAAACTAAATCCATAACCAAACGGAGGAATGAACACTGCCACCGTGTGGATGCCAACACACACCTTAGCTGTACAATCAATATGAAtagagaaagcaaaacaaaaacaaaaattcagCTAAAAgttgtgatttttgtatttacagtttacagataTGGGGGTGGGTGGTAGGGTTTTGTGATAAAAACGTCATGATGATTCCTGATCTCTGTAACCGAACGGAAAGCTACCAGTCCAGAGCCAACTAAAGGAAAGCctcattcagtcagtgtgtgtgcgttcGCTGTTGTACGTACTTGCGTCTATAGGTCAATGTGAGTGTGTGCCATTTACATCCTATTTTGCCATTTCCGCCACACAAAGGATATTATTTAGCTTTCATTTCCTGCATGTTTTGATACAATACCTACTGAAGCAGCAGGGTGAAATatagaatgttttttattttacaaagtttATAAGGAAACTGAGTAGGAGCCTCAAAGTGCTGATGACATTTGTAATCAGACTGCCTCTGGTAAACTTGATTCTTTATGTGCCTCAAACATATTATGAATGAAGAACTGCTgttattattgaaatacaaatgagTGATAAGCCTCCATTCCTCTccctcttgtttttttattgtttatttaaaactgttgCTGCCCGTTTACTCTGTATGCAGGTATCATTCAAAGAGGAACaaatgcaagtgtgtgtgtgttttgcattttttttttgtacagtccacaataaacaattttcaaaacat

Function

GO: NA

KEGG:

id description
K08042 ADCY2; adenylate cyclase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 588491 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 977989 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1244502 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1610763 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 443800 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 579593 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 579664 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 579664 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 632167 16668897 ~ 16669511 (-) True G62580
AMCG00020309 mRNA downstream 78387 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020308 mRNA downstream 110491 15893227 ~ 15901574 (-) True AMCG00020308
AMCG00020310 mRNA downstream 120017 15868506 ~ 15892048 (-) True AMCG00020310
AMCG00020303 mRNA downstream 691789 15308859 ~ 15320276 (-) True AMCG00020303
AMCG00020301 mRNA downstream 704569 15270793 ~ 15307496 (-) True AMCG00020301
AMCG00020313 mRNA upstream 30683 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020317 mRNA upstream 52226 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020316 mRNA upstream 62416 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020323 mRNA upstream 420849 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020325 mRNA upstream 435854 16472584 ~ 16473662 (-) True AMCG00020325
TU77709 other downstream 1679658 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1880496 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 2203732 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 2203732 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 2346480 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 62170 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 62170 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 82259 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 216058 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 235721 16272451 ~ 16275573 (-) True G62421

Expression Profile