RNA id: AMCG00020313


Basic Information

Item Value
RNA id AMCG00020313
length 1848
RNA type mRNA
GC content 0.56
exon number 13
gene id AMCG00020313
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16067413 ~ 16078705 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAGAAAAATTTCAGCCCAGGGGAACCTGACAGCGTACCCCTGGATCCTGCATCTCTTGTGCGAGCCTGCGTGTGCTGTCATGCCGATGGCCCTGTGCCCAATTTTATGTCGAAGCAACTGAGAGCCGGCTGGCTCTATGAATCGCCAACCTCCTCAAGGTGCTTCCTGGAGTCGTGTGGCCATGAGATACGCTGCCGGACAGTTGCCTCCGcccccgtccccgtccccaCCTCGGACGCAGAGCATCGGAGTAGTGCAGCCTTGGCTGTGGTGGGGTTCCGCTGTCCAGAGGGGCCCTGTATTCATGCAGAAATCATCCTGAAAACTTTCTGCTCCATGGTGTTAGTGACAGGAAGCTCGCTCCACGAGGAGATCAAAGACTTCTACGAGTACATGTCGCCACGACCAGAGGAGGATAGGATGAGGATGGAGGTGGTGAAGAGGATAGAGGGTGTGATCAAGGACCTGTGGCCCAGTGCTGACGTAAGGCTGCCTGTTGGGGACTGCCCTCCCAGTGAGGGGACTGGTGACATTGATCTGGTTGTGTTCGGGAAGTGGGACACCCTGCCACTGTGGACTCTGGAAGAAGCCCTTCGGAAACAGAATGTGGCCGATGAGAATTCGGTCAAGGTGCTGGACAAGGCTACGGTTCCTATTATCAAGCTGACGGACTCGTACACTGAGGTGAAAGTGGATATCAGCTTCAATGTGCAGAATGGGGTGAAAGCTGCGATGCTCATCAAAGACTTCATAAAGaaATATCCAGTGCTTCCTTACTTGGTGCTGGTGCTGAAGCAGTTCCTGTTACAAAGGGATCTGAATGAAGTGTTTACAGGGGGGATTGGCTCTTATAGCCTGTTCCTCATGGCGGTTAGCTTCCTACAGATGCATTACAGGGAAGATGCCAGCAGTCCCAATGCCAACATCGGCGTCCTTTTAATAGAATTCTTCGAGCTCTACGGACGACACTTCAACTACCTGAAGACGGGCATCCGGATAAAGGACGGGGGATCCTATGTGGCCAAGGACGATGTTCAGAAGAGCATGGTGGATGGATATCGGCCGTCCATGCTGTACATCGAGGACCCCCTCCAGCCAGGCAATGACGTGGGACGCAGCTCTTACGGTGCTATGCAGGTGAAACAGGCCTTCGACTACGCCTACGTGATCCTCAGCCACGCAGTCTGCCCCCTCGCCAGGCACTACCCCAACAATGAGTCCGAAAGCATCCTGGGCCGAATCATCCGCGTGACGCAGGAAGTGGCGGAGTACAGGGACTGGATCACCAAGAACTGGGGTCCTCAGTCTCAGAACGACTCCTCCTTTAATGGGAATGACGTGATGCTCCTGGTGGAGCCCCAGCAGCTGGacaaatgcaacaacaacatCTCAGATGAAGTGGTCATGCTGCCGCCATCACGAAGCAATCACTCCTCTTCCTCCGGGCcgccctcctccccctcctcctcatcctcgccttcctccccctcctccacagCCTCAAGCTCCAGTGACGCAGACTCGGACGGCACCCCATGTAAAACTGTGAAACCCCTCAGCAGAGGGTCCAGCTCCCACAGAGATCCGGCAGGGGGAGCCACCCCTTACAGAGCACAGAGCCATTCCTCCTGCAGCCCTGCCAGCAACATCAACAAGGGGAAGcaTGGAACGAGACAGTTTCGCTTGTCTTCGAGCAAAAGCACTCACGGGCAGCAGAGCTCTGGACAGTTGAGCGTATCGGGGAGCAGTAAAACACAGCAAGGTGGCAAGACGCATCACCAGTACGGTGGTAAGAAGAGGAAACCCCAGCGGGAGGCGGCACACGAGGACCTCTGCAGATAG

Function

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 643839 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1033337 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1299850 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1666111 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 401825 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 537618 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 537689 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 537689 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 590192 16668897 ~ 16669511 (-) True G62580
AMCG00020312 mRNA downstream 30683 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020309 mRNA downstream 133735 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020308 mRNA downstream 165839 15893227 ~ 15901574 (-) True AMCG00020308
AMCG00020310 mRNA downstream 175365 15868506 ~ 15892048 (-) True AMCG00020310
AMCG00020303 mRNA downstream 747137 15308859 ~ 15320276 (-) True AMCG00020303
AMCG00020317 mRNA upstream 10251 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020316 mRNA upstream 20441 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020323 mRNA upstream 378874 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020325 mRNA upstream 393879 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020324 mRNA upstream 395568 16474273 ~ 16479633 (-) True AMCG00020324
TU77709 other downstream 1735006 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1935844 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 2259080 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 2259080 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 2401828 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 20195 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 20195 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 40284 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 174083 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 193746 16272451 ~ 16275573 (-) True G62421

Expression Profile