RNA id: AMCG00020314


Basic Information

Item Value
RNA id AMCG00020314
length 3306
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00020314
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16177608 ~ 16180913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGGGGACAGCTGTGATCTGGGCATGGGAGAGGAAGAAGGGGGCACGGGGCTGCCTTACCCATGCCAGTTCTGTGACAAGTCCTTCAGCAGGCTGAGTTACCTGAAGAGACATGAGCAGATCCACAGCGACAAGCTGCCCTTCAAGTGCACCTACTGCAGCCGGCTCTTCAAGCACAAGCGCAGCCGTGACCGCCACGTCAAGCTGCACACGGGTGACAAGAAGTACCACTGCCATGAGTGCGAGGCTGCCTTCTCACGCAGCGACCACCTGAAGATCCACCTGAAGACGCACAGCTCCAGCAAGCCCTTTAAGTGCACCGTCTGCAAGCGAGGCTTCTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGCCcacaagaagaacaaggagcACGTGGCGCGGGCTGAGAAGGAAGTGGGCAAGAAGGATGACCTGTACATGTGCGATTACTGCGAGGAGACCTTCAGCCAAACCGACGAGCTGGAGAAGCACGTTCTCACACGCCACCCTCAGCTCTCTGAGAAGGCTGACCTGCAGTGCATCCACTGCCCTGAGGTTTTCTCTGACGAGGGCTCCCTGCTGAGCCACATCGACCAGACCCACGCCAACAAGAAGCACAAGTGCCCAATGTGCCCGGAGCAGTTCTCCTCTGTGGAGGATGTCTACTGCCACCTGGACACCCACCGTCAGCCTGACTCCAGCAACCACAGTATCAGCCCCGATCCTGTGCTGGGCAGCGTTGCCTCCATGAGCAGCGCCACTCCTGACTCCAGCGCATCTGTAGAGAGAGGCTCCACCCCTGATTCCACCCTGAAGCCCTCCAGGGCCGCCCGGAAGCTGGTCTCTTCTGAGCGAGAGGACAGTCAGAACTGGACAGCCAAAGTCACCTACAGCTGCCCCTACTGCTCCAAGCGGGACTTCAACAGCCTTGCAGTGTTGGAGATCCACCTCAAGACCATTCATGCTGACAAGCCCCAGCAGAGTCACACGTGCCAACTGTGCCTGGACTCCCTGCCCACGCTGTACAACTTGAATGAGCACGTCCGCAAGGCACACCGCAACAGCAGCGCCTTCCCAGTCCTGCAGTTCAGCAACGTCTCCGCCTTCCACTGCAACTACTGCCCAGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATCCGAGTCACCCACTGCCTCCCCGGTGTCGCCTCCACCACCCTGGAGGGCAACCATGCCTTCTTCTGCAACCAGTGCTCCATGGGTTTCCTCACCGAATCCTCCCTTACCGAACACATCCAGCAGACCCACTGCAACGTGGGCAGCTCAAAGCTGGAGTCCCCCGTCATGCAGCCTTCCCAGTCCTTCATGGAGGTCTACTCCTGCCCCTACTGCACCAACTCGCCCATCTTCGGCTCCATTTTGAAACTCACCAAGCATATCAAGGAGAACCATAAGAACATCCCACTGGCCAACAACAAGCGCTCCAAGGCAGACCACAGCCCTGTGTCGTCTGATGTTGAGATATCTTCCCCGAAGCGGCAGAGACTGGCTGCCAGTGCTACCCCAGGCTCTAACGGGGAGTATCCATGCAACCAGTGTGACCTCAAGTTCGCCAGCTTTGAGGGCTTCCAGGCTCACCTGAAGTCACatctggagctgctgctgaggAAGCAGTCCTGCCCGCAGTGCAAAGAGGACTTTGACTCACAGGATTCCCTTCTGCAGCACTTGACCGTCCACTACATGACCACGTCCACCCACTATGTGTGCGAGAGCTGCGACAAGCAGTTCTCCTCAGTGGATGACCTGCAGAAGCACCTGCTGGACATGCACACCTTCGTCCTGTACCACTGCACCCTGTGCCAGGAGGTGTTCGACTCCAAGGTCTCCATCCAGGTGCACCTGGCTGTCAAGCACAGCAACGAGAAGAAGATGTACCGCTGCACTGCCTGCAACTGGGATTTCCGCAAGGAGACAGACCTCCAGCTGCACGTGAAGCACAGCCACCTGGGCAACCCGGCCAAGGCCCGCAAGTGCATCTTCTGCGGGGAGATGTTCAGCACAGAGGTGGAGCTGCAGTGCCACATCACCACCCACAGCAAGAAGTACAACTGCCGCTTCTGCAGCAAGGCCTTCCACGCCATCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCACTGTGTCTTCGACGGTGGCAATGGCAGCCAGAATGGAACACCCAACGGTGTGCCCCCAGTAGCCAAGAGGGCTGCAGAGGCTCCTGACCTGCAGAACATGCTGCTGAAGACTCAGGAGACGGTGAACAGCCACGAGGCCAGCGAGGATGATGTGGATGCGTCTGAGCCCATGTACGGTTGTGACATCTGCGGTGCCGCCTACACAATGGAGGGGCTGCTGCAGAACCACCGCCTGCGGGACCACAACATCCGGCCCGGCGAGGATGACTGCTCACGCAAGAAGGCTGAGTTCATCAAAGGCACCCACAAGTGCAATGTGTGCTCACGGACCTTTTTCTCGGAGAACGGGCTGCGGGAGCACATGCAGACCCACCGCGGCCCCGCCAAACATTACATGTGCCCCATCTGTGGGGAGCGCTTCCCCTCGCTGCTCACTCTCACCGAGCACAAGGTGACGCACAGCAAGAGCCTGGACACCGGCACCTGCCGCATCTGCAAGATGCCCCTGCAGAGTGAGGAGGAGTTCATCGAGCACTGCCAGATGCACCCAGACCTCCGCAACTCCCTCACCGGGTTCCGTTGCGTGGTGTGCATGCAGACCGTCACCTCCACCCTGGAGCTCAAGATCCACGGCACCTTCCACATGCAGAAACTGTCCACCAACTCTGCCTCTTCCTCCCCCAACGGCCATCTGCAGAAGCTGTACAAGTGCGCCCTGTGCCTGAAGGAGTTCAAGAACAAACAGGACTTGGTCAAGCTGGATGTGAACGGGCTGCCCTATGGGCTGTGTGCAGGATGTATGAGCAGAGGCACCAACGGCCAGTCCTCAAGCAGTGTGGGTGGGGGAGGGCCGGGGCAGGGGGTCGGGGTGTCACAGGATCCCGGAGAGAAGCCCCTGGCTGGCCTGCGCTGCCCGGAGTGTGCAGTGAAGTTTGAGAGCGTAGAGGACCTGGAGAGCCACGTGCAACTAGACCACCGGGAGATGACGCCCGAGACCAGCAACCAGAAGAAGGTGGCAGACGCCTCTCCGGCCCCCAAAGTGAGTACAGAGTCCCAGAGGAGATCTGGATTTCAAATAAATCGATTAATTCAACGATCAATGTGCCTCTCCGATGACCCACAGTTGTCTGatctgtga

Function

GO: NA

KEGG:

id description
K22870 ZNF423; zinc finger protein 423

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78128 lncRNA upstream 76798 16098986 ~ 16100810 (+) True G62398
TU78095 lncRNA upstream 110792 16064095 ~ 16066816 (+) True G62368
TU77989 lncRNA upstream 754035 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 842552 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 879427 15297747 ~ 15298181 (+) True G62251
TU78174 lncRNA downstream 234565 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 234565 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 320871 16501784 ~ 16504823 (+) True G62480
TU78248 lncRNA downstream 352443 16533356 ~ 16535401 (+) True G62494
TU78259 lncRNA downstream 366823 16547736 ~ 16565189 (+) True G62504
AMCG00020318 mRNA upstream 22976 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020315 mRNA upstream 64703 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020311 mRNA upstream 165989 16003430 ~ 16011619 (+) True AMCG00020311
AMCG00020307 mRNA upstream 269292 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020305 mRNA upstream 399467 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020319 mRNA downstream 51668 16232581 ~ 16236548 (+) True AMCG00020319
AMCG00020320 mRNA downstream 73580 16254493 ~ 16274574 (+) True AMCG00020320
AMCG00020321 mRNA downstream 112581 16293494 ~ 16299985 (+) True AMCG00020321
AMCG00020322 mRNA downstream 239410 16420323 ~ 16434057 (+) True AMCG00020322
AMCG00020326 mRNA downstream 269923 16450836 ~ 16452635 (+) True AMCG00020326
TU77751 other upstream 1708308 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2226561 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2311045 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2342776 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2826896 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 633461 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1278247 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1747415 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1877645 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 1886874 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile