RNA id: TU78131


Basic Information

Item Value
RNA id TU78131
length 2283
RNA type TUCP
GC content 0.42
exon number 6
gene id AMCG00020316
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16098900 ~ 16102739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCGTGTGAGTGCCTGGGCCCGAGGTGAGCCGGAGACACAATTTGGCGAGTGTGAGCGATGAATTCTCTGGAGCAGGCCGAAGGTAGTCACCACGATCTCAAGGCCTTTGAAAGAAGACTGACGGAGTACGTGTCCTGTTTGCAACCTGCTACAGGGAGGTGGCGCATGATTCTCATTGTGGTGTCTGTCTGTACGGCGACTGGGGCTTGGAACTGGCTCATAGACCCGGAAACACAGAAGGTGTCCTTCTTCACATCTCTTTGGAATCACCCTTTTTTCACCATCAGTTGTATAACGCTGATAGGTCTGTTCTTCGCTGGAATACACAAGAGAGTGGTGGCCCCATCGATAATTGCAGCGCGGTGCCGGACTGTTCTAGCTGAGTACAACATGTCCTGCGATGATACGGGGAAACTCATTCTGAAGCCACGGCCACACGTCCAGTAGCGCATTTCCTTTCCTGCGGATGCCGACCCACACTGTGAAATGGCTTTGCATAGGAACGATCCGTCTCTACCTAATGAACTGTGCACAGACGGAAAACCCTCGAAAGTCATTTCCAAAGGGAGTAACGGAAGAGGGGGGAAGAAGggatgcataaaaacaaaacaactacaacaacaaaaactgttgCTAGTAAATAATGATTTGTACAGTTTCTTTAAGCATGAGGATCACAAGATCACGTGGAGCGATGTCTGTGCGCATCGTGCTTCGGTGTGGCTGTGTCACTTTAAAAGCTGTCGTCTGTGTGTGAAACGCGTCACACTCACGCACCCGTATGACCAAGCAGCCCTGGTCCCGGTCTCTCATACTGGGTTGACCTTGTCTCTCCGGTGACTGTAAATCACCCGGGGCACCGCTGCGTCGCGGTGCGGGGGGGCGTGTGTACGATTTTTAGCTTTTAAACCAGTTCAAAGGGAAATATCatgatgtgtgttttatatctCATTGCTACGGTTGGCTTCCTCTCCTGTGCTGTCAGATTCACCACCAGTCGGGCCCATTACAGCCCTAAACTGAAGGTGTTTCCCTGGACATCATTCACAAGAGCCGGTCTGCAGAGAACTCCTCTTTAAAACtatagaatatttttttgtattttttcttctataaatgtgtatatatatatatatatatatatatgatgtgcAGACTTTGCAAATGCTTGCTATTTTCCTGCCACAGCCACTGTCTCATTTGGTTGTGAATGTCATCCTTTTTCacctgtatattttaattttgcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgcgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtacgGAAATGTCTTTGAACCCAGTGATGAGATCTAgattctgtttgtgtctgtgaccACATGACACATGTTGCCGTGTGCCAGCTGAGTCTTACGGTCACAGTGACCTTTCTGCGTGTTCTCATAGCAGCCCGACAGGCTTAAAAGTCAGTGTTTAAAAGGGGCTTGTTGTTGATTAGTTAAATAATCGAGCACTGTTTTGACACTGAGGACACTATTGGTAATTTGAACTATGGCATTTCTGTGAAGCCTGTatgccattttattattattgtatttgtttattaatatttaagtaAAGGAATAAAATCAGTATGagatcctttaaaaaaaaaaaaaaaactgacttcATGGTATTTCTGCACTGTAAGAAATTATATGTgggttaatattttaaattttgattaattaaattaattcaaacagTGCTGATGATATGTACTCTCTGTCAGGGTGACGCATACCCAAGCATTGCTGCCCGATGATCAGTCAAAGCTGTTTGTTGAAGGTGAAATTTAAACAGACCTTGTAAAGTGATCTGGAAATgagttcatttttgtttatcttCTTGAATGTCATATTTCAGATTCTCATATCTTAGTTGCATATCAGAATTTCATCATTCTTAAGATTAGAAGAACTCTgtcatatgtttgtttttcattgttttggtACTTCTACAGTGGTATGTACTCTGGCAAATAactaaacattttgattttggaCAGTGCAATCttagcagatgtttttttttttaatctcaattcatttattttgtttcccaaaTCTCTTGCAATAAATGCggtattaattttaaaaggtgttgttttgtataatgTGTGTTGTGACTGCTGCTTAACCCCCTATACTGctacattcacatttaaactatattttcacCAACAAAACAAGCCTTCCTAAGACTTCCtttctaatatttaatttattgtatattttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 675326 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1064824 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1331337 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1697598 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 377791 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 513584 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 513655 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 513655 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 566158 16668897 ~ 16669511 (-) True G62580
AMCG00020317 mRNA downstream 1347 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020313 mRNA downstream 20195 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020312 mRNA downstream 62170 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020309 mRNA downstream 165222 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020308 mRNA downstream 197326 15893227 ~ 15901574 (-) True AMCG00020308
AMCG00020323 mRNA upstream 354840 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020325 mRNA upstream 369845 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020324 mRNA upstream 371534 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020328 mRNA upstream 431957 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020329 mRNA upstream 455803 16558542 ~ 16569600 (-) True AMCG00020329
TU77709 other downstream 1766493 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1967331 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 2290567 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 2290567 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 2433315 13664087 ~ 13665585 (-) False AMCG00020229
TU78145 other upstream 16250 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 150049 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 169712 16272451 ~ 16275573 (-) True G62421
TU78391 other upstream 690127 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1507925 17610664 ~ 17626189 (-) True G62853

Expression Profile