RNA id: AMCG00020317


Basic Information

Item Value
RNA id AMCG00020317
length 2507
RNA type mRNA
GC content 0.57
exon number 15
gene id AMCG00020317
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16088956 ~ 16097553 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCCGCTGTGTGCGCACATGGCCGGGCGCAGGCTCAGAGACACGGCGTGAGACGGAGACTCTGTGTGTATTAACAAAGTTAAGATTCACGTATCCCATCTTGGGGCCAGCAGGCAATGGGAAAAAGCAAGAATAAGAAGTTCAAGCGGCCGGCTTTCGGTACGACCGGGCTCCCCGTCCCTGTCTCCCCGAGAGAGGCCGACGAGGACGGAGAAGTGGACTCTCCGGCCGGCGAGCTGCTGGAGAAGCTGCAGAGCCCCAGCCCTGATGTGCGAGAGTGCGCTTGTGCCAGTATCTCTCGGATGGTGCAGCAGAGTCAGACCATCCCGGCGTTCCTGCAGCGCGACGCTGTGCGCTGCCTCGGCCCCCTGCTGCTGGACCGCAGCCTGGCTGTGAGGGAAACTGCCACCGGGGCGCTCAGAAACCTGAGTGCGTGTGGCGGGTACGACgtgtgtgaagacatggtgAAGCAAGACATCCTGACGCCCCTGACCGCCCTGCTGCGAGAGTGCTGCACCGCGTTTGACTCCAGCACCACTCCCTCACCCACGTCTAATAAAACCCAGAGGAAGTGTGTGGAGGACATTGCCAATGAGGCAGTGAACCTGCTGTGGAACCTGTGTGAGAGCAGCAGCCTGGCACTGTCTGTATTCAATAAGCAGGGGCTGCTGGAGTTGCTGATGCTGTGTCTGCAGAgacacccccaacacacagagcTGGCCGTGTCTGCGGCACACTGCCTGCAAACGGTGACCGAGGACAACGCGGAGCTGCTGGGGGCCGTGACGCCGGCCATGTTGCAGGGGCTGGAGTCTGTGCTGCTGTCCTCACAGCCCTCCCTCTCGCACACGCTGCTGAGGATACTGATCGCAGGTTCAGTGTGGAACCTGAAGGGGGCCCTCCCCTCTGGGCAGCAAGCACAGACCCTGAATGCCCTGATCGCCACCCTGACCGCCAGTCTGGAGCTTGACTCGGGCCAAGTCATCATTGAGCTGCAGGAGGCTGAGGCCAGGCAGAGGACTGAGGCGGTGGACGGCACTGTGGCAGGGGAGcaggtggtggtggaggagatggaggaggaggagaagggttTGAGAAATGGGAACGTGCCCATGAGGAGTGATGACCTCTCCGACCTGCTGCCAGTGGAGAACGAGGAGCTGAGGGAGGCCTCTGCACTGCTGTCGGCCCAGCAGACCTCACTGGAGATCATCGTCAACATGTGTTGCTCTGACGacCCGTCTGATGACGAGTGGGAGGAGCAGTCCAGCAGTGATGAAAGTGACCTCTGTACCGATGGCGTTTCCGAGTCATCCAATCAGCTGCTGTCCCCACTGTGTATGTCTGCGGAGGTGCACAACGCCCTGCTCAACCACAGTGTCCCTGAGAAGGTTCTGAAGAAGACCGAATTCCCCAGCAGTGCTGCAGTGGAGGCCTGTAACAAGAACCCGGCCTGGAAGGGCCTGGTGAAGAAGATGCAGCGGGTGCAGTGCCGGGCGCTCACCTGCCTGCACAACATGCTGTCCGTCATGGAGGTAGAGTCTCTGGGGGGGGTCACTGCCCTGCAGGCGCTGGCGGAACACCTCTCTAAACTGGTCTTCAGCACAGCAGACGAGTTCCTGGAGGCGATCACCAGCGCCCTGAGGTCTCTGTTACAGATCATGGCCTCCAAAAATATCCCACAGTGCATGAGCCCCCAGCAGCTGATGAGCCTGAGTGAGGTGGCGGCACAGTGTCAGACGGTCAGTGTGAGGGTCAATGCTCTGGCCATCCTGGGCATCACAGGCAGCACTCTGGCCAAAGAGCAGGACACGGCCAACAGCCTTCAGATGATCGGGACCTTCCTGCTGCAGGTGGCGTCCAAGGACTCCAGCCTGGTGGTGTGCGGGGAGGCTCTGGACGCTCTGTTCGATGTGTTCGCTGACGGAGCCGAGGCAGAGCGCGCCGCCAAGACCATCCAGCTGCTATCTGCACTCAAAGCCCTGCAGCCGGTCTTCAAAGCCAAGCTGCGTAAGGAAGGCAAGGGGAAGTATAGCCCAGACCAGCTGTGTGTGCTGGACAACATCAAGGTCAACCTGCGGAGGTTCATAGGGTATCTGGAGAAAAACTGCTCTTAACTCTGGCTGCTGGACTGACTGCACATGGACAGACATATaaatggagggagagagagagtgtgaggaAAGGGGACTGCAATCTGTACGACTGAACAGAAGAGAAAGATCCTGCAGCCAAAATGACTGATGGTTGCTGTGAGGGTCTCTGGTTTACTCCCCCATCCATTCAGACTGTGCAAAGTGTACTggactgttttttatttttggttttcggtttgttttgtttttatttcttaaaaaaaaaaaaaaaaaaactaattttgatttttagaaaataagGCATTgctttatgattaaaaaaagtgaGAAAAGTGGGATGGTTGCAATATTGCTACATTGAAGAAAGACATCTATTGCAAAAACTGAGCAAAATAAAGTCTTTAATATAA

Function

GO: NA

KEGG:

id description
K24812 HEATR3; HEAT repeat-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 665382 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1054880 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1321393 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1687654 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 382977 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 518770 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 518841 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 518841 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 571344 16668897 ~ 16669511 (-) True G62580
AMCG00020313 mRNA downstream 10251 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020312 mRNA downstream 52226 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020309 mRNA downstream 155278 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020308 mRNA downstream 187382 15893227 ~ 15901574 (-) True AMCG00020308
AMCG00020310 mRNA downstream 196908 15868506 ~ 15892048 (-) True AMCG00020310
AMCG00020316 mRNA upstream 1593 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020323 mRNA upstream 360026 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020325 mRNA upstream 375031 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020324 mRNA upstream 376720 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020328 mRNA upstream 437143 16534696 ~ 16548548 (-) True AMCG00020328
TU77709 other downstream 1756549 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1957387 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 2280623 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 2280623 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 2423371 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 1347 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1347 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 21436 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 155235 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 174898 16272451 ~ 16275573 (-) True G62421

Expression Profile