RNA id: AMCG00020320



Basic Information


Item Value
RNA id AMCG00020320
length 1365
RNA type mRNA
GC content 0.64
exon number 7
gene id AMCG00020320
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16254493 ~ 16274574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAAGATCCTCTGGTTTGGTTCGGGGCAGACACGGGGTTTAAGCCGCAGTTTGTGCGCTCAGTCCTGCAGCGGAACGGGATCCCAAACACGGCAGAAGCTGCAGACCGTCCCTGCGCCGCGCATCAGCTGCCAGGCGCCGGTGGCAGAAAGTTTGGGCTCCGGGAGGCGCGGACGGCCCGGCTCAGACTACCTGCGCGGCCGGCAGGGCCACTGAGGGCACGACGACCCCCGGCGGGCCGGCCCCGTGTGCTTTTATACAGTATAACTCCGCCGAGCACAGGCGTCGGAGGTCCGGGCGGTGCGCAGTGTATTTCCGGGTGCCGGGCTCTGTGGCGCTGGAGGATCCGCATCCCTGGCGCTGTGTCAGGGCAGAGCTGTGCGACAAACGGTAATAACGACCATCGTAACCGTCCGCGCTTTGTGTGCCCTGCAGCTGAGGGCGGGAGTGCGGGCTCGGGCATGGCGGCGGCGCTGCTGTcggaggcggagatccagcgcgGCTCCATGGCGGAGGAGGACCCCAACGGCAACCAGCACGGCCCGGCCGCGCAGAGCAGCAGGGCCCCGCGGTGGGGGCCGCAGCACGCCGGGGCCAGGCAGCTTGCGGGGCTCTACTCGCCAGACTTCGCCTCCGGCCTGGTGCACTGGGGAGCCGATACCTGGGGCTCAGTTGACATTCCGGTCATCGGCAAGGCTTTCATCAGGCCGTTCAGAGAGCATCACATCGACCCCACAGCCATCACCCGGCACGACTTCATCGAGACCAATGGGGACAACTGCATGATCACCATCCTGCCACTGGCTCACATGGCCTACAAGTTCCTCTGCTATTCTCCAGaggCCCTGGCCGATCTGTACCCCTGGGAGTGCTACGTGTTCGCCCTGGCCATCTTCGTCACCATGACCAACCAGATCCACAAGTGGTCGCACTCGTACTTTGGGCTGCCACGCTGGGTCACACTGCTGCAGGACTGCCACATCATCCTGCCCCGCAAGCACCACCGCATCCACCACGTCGCCCCCCACGAGACGTACTTCTGCATCACCacagGTTGGCTGAATTTCCCTCTGCACTGTCTGGGCTTCTGGCAGCGGATGGAGGGTCTGATCGAAACCGTGACCGGACACAAGCCTCGGAGCGACGACATGAAGTGGGCGCACAAAATGGAGACCGGCGTGACCTTCCTGCCGACTGGGGTCACAGGCAGCATCTCGCAGATGATGGACCaccaggagaggagaggagagagagcggaGACGGAGCACAGCCTGGAGAGTTGCCTGCGCGGGGCTCGGCAGCCAACACTACGCTGTTCAACATATCCTTCATGGCACAGTCGAactatacaaaaaacacaataa

Function


GO: NA

KEGG:

id description
K20656 TMEM189; plasmanylethanolamine desaturase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78128 lncRNA upstream 153683 16098986 ~ 16100810 (+) True G62398
TU78095 lncRNA upstream 187677 16064095 ~ 16066816 (+) True G62368
TU77989 lncRNA upstream 830920 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 919437 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 956312 15297747 ~ 15298181 (+) True G62251
TU78174 lncRNA downstream 140904 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 140904 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 227210 16501784 ~ 16504823 (+) True G62480
TU78248 lncRNA downstream 258782 16533356 ~ 16535401 (+) True G62494
TU78259 lncRNA downstream 273162 16547736 ~ 16565189 (+) True G62504
AMCG00020319 mRNA upstream 17945 16232581 ~ 16236548 (+) True AMCG00020319
AMCG00020314 mRNA upstream 73580 16177608 ~ 16180913 (+) True AMCG00020314
AMCG00020318 mRNA upstream 99861 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020315 mRNA upstream 141588 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020311 mRNA upstream 242874 16003430 ~ 16011619 (+) True AMCG00020311
AMCG00020321 mRNA downstream 18920 16293494 ~ 16299985 (+) True AMCG00020321
AMCG00020322 mRNA downstream 145749 16420323 ~ 16434057 (+) True AMCG00020322
AMCG00020326 mRNA downstream 176262 16450836 ~ 16452635 (+) True AMCG00020326
AMCG00020327 mRNA downstream 275512 16550086 ~ 16557457 (+) True AMCG00020327
AMCG00020331 mRNA downstream 322982 16597556 ~ 16604658 (+) True AMCG00020331
TU77751 other upstream 1785193 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2303446 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2387930 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2419661 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2903781 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 539800 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1184586 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1653754 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1783984 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 1793213 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile