RNA id: AMCG00020321


Basic Information

Item Value
RNA id AMCG00020321
length 1988
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00020321
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16293494 ~ 16299985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGATCTGCTGAAAATGTGAAGGGCGGGAGCATCCGCGACCGagcctttgtgtttctgttctaATATCTCACATATCAATAATTCACAGCGGCAGCAGACGGACACTGCACTATGTATTCAACTGAGCTTCAACTGGACAAGGGCCGCGCTCTGCACTCCGGGGCTTATTGGACTCAACCTTAGAGGGAGACGAGAAGGCGGGGAGCACCAGCCGAGAGAGCAAGAGCGCAccgcagagcagagcagagccagggagagagagggggcaagGACGCGCCgaacaagagaagaaaaagaaaaagaaagcataaGAGACAAGAGACGATTCCCCcttgaaggaaagaaaaaacggGGAGAGAGCATCCTACTGTTAAGCaaaagaagggaagaaaagaaagaccgtgaagagaaagaaagggggggggggaagtacAGCCTTAAAAAACTGGATTGGATAAAAAGATAAGGAGTGTCCATTTTTCTATtaagagaaagaagagaaagctGTGAAAGCCCTAGTGGGATACCGTCCTGCATTCAGGTGCAGACTGAAGTCGCCGTCATGTTGGTGCTGTTAGTGAGCGCGGTGTGGCTCACCGGATTAGTGTGCGGGCAGAATGAGACGGAGCCCATCGTCCTGGAGGGGAAATGCCTCGTCGTGTGCGACTCCAACCCCACCTCGGACCCGACGGGCACCGCGCTCGGGATATCGGTGCGGTCGGGGAGCGCAAAGGTGGCTTTCTCCGCTGTCAGAAACACCAACCACGAACCCTCCGAGATGAGCAACCGCACCATGGTCATCTACTTTGATCAGgTACTAGTGAACGTTGGGCACAATTTCGATGCGGACAGAAGCAATTTCATCGCCCCACGAAAAGGGATTTACAGTTTCAATTTCCATGTTGTGAAAGTGTATAATAGACAGACGATCCAGGTGAGCCTGATGCTGAACGGCTGGCCGGTGATCTCTGCCTTTGCCGGAGACCAGGATGTGACCCGGGAGGCTGCCAGCAACGGCGTTCTGGTGCAGATGGAGAAGGGGGACCGGGCGTACCTGAAACTGGAGAGGGGCAACCTCATGGGGGGCTGGAAATACTCCACGTTCTCAGGATTCCTGGTCTTCCCCCTCTAAAGGACTAAAACTCTTGAACGTTGGGAATCtctaaaaaaagaagaaagaagaaaaggtgGTAGGAAAACACTGGCTCTCCAATGCACACATTTAGCTGCTTGTCAGAGCTCTGGACAGCAAACTTTTATACCGTCAAATATATTCTATAAAAAAAGGCCAAGTCCTTCGTTATCTGCGCCTGTATGCGTCTGCTTCGAGGAATGTTTCTAGTCTCTATTCACAGTCAAAGAGCTGAACATCACACCTTTTTGGGAGGGgagattttaatttccttttcctttttttttctttgcatcgCCGCATTTATGTGTTCATGTACAGATCTTTCCACGCTGGGATCCATTTTATTGAATCGTTTGTTTTCACtcattgcattaaaatgaatgaagaatacacgtttttttccttttccaaatcCATGTGTGCTATAATGtatgtgcttttaatttaatgattctAGTATTTTTTGATTCTTCCTATAATGGATTCTTGGGTCACGTGTGGAGAAAGTACAAACAATATGGAGAACTCTTGCTGTATACTAATCTATAAAATCCTAAAGTTTATATATGATATAACCTATTAATAGCCAAACCTGTTTGACTAtctgtatttcagtatttcGATGTAATTTTCAGTGGTTGTGGCATATCCGGCTGCTATTTCTTCTGAtgcttcttgttttgtttcagtcaaATGTGGCGAAACTAAATGCCAGAAACTATAATGGAATTTTattataactgtaaaatatgtgtgaatatttaaaaggttctttttctttttcttttatttttttgctttaaaccaataaaatctaaatggtacttttatttttcttaaccaGACCTTA

Function

GO: NA

KEGG:

id description
K24235 CBLN; cerebellin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78128 lncRNA upstream 192684 16098986 ~ 16100810 (+) True G62398
TU78095 lncRNA upstream 226678 16064095 ~ 16066816 (+) True G62368
TU77989 lncRNA upstream 869921 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 958438 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 995313 15297747 ~ 15298181 (+) True G62251
TU78174 lncRNA downstream 115493 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 115493 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 201799 16501784 ~ 16504823 (+) True G62480
TU78248 lncRNA downstream 233371 16533356 ~ 16535401 (+) True G62494
TU78259 lncRNA downstream 247751 16547736 ~ 16565189 (+) True G62504
AMCG00020320 mRNA upstream 18920 16254493 ~ 16274574 (+) True AMCG00020320
AMCG00020319 mRNA upstream 56946 16232581 ~ 16236548 (+) True AMCG00020319
AMCG00020314 mRNA upstream 112581 16177608 ~ 16180913 (+) True AMCG00020314
AMCG00020318 mRNA upstream 138862 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020315 mRNA upstream 180589 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020322 mRNA downstream 120338 16420323 ~ 16434057 (+) True AMCG00020322
AMCG00020326 mRNA downstream 150851 16450836 ~ 16452635 (+) True AMCG00020326
AMCG00020327 mRNA downstream 250101 16550086 ~ 16557457 (+) True AMCG00020327
AMCG00020331 mRNA downstream 297571 16597556 ~ 16604658 (+) True AMCG00020331
AMCG00020338 mRNA downstream 316431 16616416 ~ 16617243 (+) True AMCG00020338
TU77751 other upstream 1824194 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2342447 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2426931 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2458662 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2942782 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 514389 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1159175 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1628343 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1758573 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 1767802 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile