RNA id: AMCG00020323


Basic Information

Item Value
RNA id AMCG00020323
length 3548
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00020323
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16457579 ~ 16469287 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcacgcacgcacgcacgcacagacTACAAACATCGGGGCTGCCAGCTCCGGCCTTTCATCtgaaagaGTGTTGGACCCGGAGCAGAACCACAGCTTCACAGACCACTACCTCAACGTGGCCTTTGACCTCTCCCAGGTGCTGTTCATCGCAACGGCAAATACCACGGCAACCATCCCGCCCGCCCTGCTGGACAGGATGGAGGTGCTGCAGGTGCCAGGGTACACCCAGGAGGAGAAGGTTGAGATCGCTCACCGCCACCTGATCCCTCACCAGCTGGAGCAGCATGGCCTGACCCCCCAGCAGGTCCAGATCCCCCAGGAGAGCACCGTGGACATCATCAGCAGGTACACGCGTGAGGCGGGGGTCCGCTCTCTGGAGAGGAAGTATGGCGCCATCTGTCGGGCTGTGGCTGTGAAGGTGGCTGAGGGTCACAAGGTTGCAAAGGCTGAACATGTCCCCCCCGGGCCAGACGCTGCAGGCCAGGAGAAGGTGGAGGCGGAGGGGGAGGGCAGGGAGGACTCTCTAGGGGGGTCGGCTGACCTGGCACTGCCCCCCGAGATGCCCATCGTGATCGACCGACACGCCCTCAAAGACATCCTGGGGCCGCCCCTCTTTGAGATGGAGTCTCCCCTTACAGCGGCCACGGCCCGGAGCACGGCattctggggtggggggggggtgcattcTGAGCAGGCTGGCTTTCCACACCGGGACTGGAATTTGAGCGGCTGGGAAGACGAAGGGCAGAGGAAGGAGAACGCCAGGGTGTCGGAGCGGCTGACGCTGCCTGGCGTGGCCATTGGCCTGGCCTGGACACCCCTTGGGGGGGAGATCATGTTCGTGGAGGCCAGCCGCATGGAAGGCGACGGCCAGCTCACCCTGACTGGCCAGCTGGGCGACGTCATGAAGGAGTCCGCTCACCTGGCCATCAGCTGGCTGCGCAGCAATGCCAAGACCTACAACCTGACCAATGCTGCAGGCAGTCCGGACCCCCTGGAAGGCACTGACATCCACCTGCACTTCCCAGCGGGCGCGGTGACCAAGGACGGCCCCTCGGCTGGCGTCACAATGGTGACCTGCCTGGCCTCTCTGTTCAGTGGGCGACTCGTGCGCTCCGATGTGGCCATGACCGGAGAGATCACACTCAGGGGGCTGGTGCTGCCGGTGGGAGGGATCAAGGATAAGGTCTTGGCGGCGCACAGAGCGGGATTAAAGCGGATTATAATTCCCAAGAGGAACGAGAAGGACCTAGAGGAGATCCCGGCCCCGGTGCGTGCCGAGCTAGACTTCGTGCTGGCCGCTTGTCTGGATGATGTGCTCAACGCCGCCTTCGACGCCGGCTTCCCCGCCCCCCGCGCCCTCCCCCGCCTCGCCAGCAAACTGTGACCCACTGACCTGCCAGCGCGGCCACACCCAGAGAGGCGGAAACGGAGACCGAGGGAGACGCTCACTAATTGATAGACAGatacacactttctctctcttcttatTTGAATGAGATTCCTAATTCTGTACGCTTACATACAACCATCAATATTGGGTGTTGGTATATTGGTATAATATTTTGGCAGATTAATAAAGTGATAGATGTATGTAGAGACTAATAACCGTTTTCTCTTAAGTTTTGTCCCTAAGCCTTCATATACACACAGCTGTTGTTTACAGACCTATAGCACTTAGAGCACGGATtgtcagagagagagcgagggagctCCATGTGTACACAGAGAGGCCATGGAGACGCACAAGAGCAGAGACACAGGCAGCAGTAGACAAAAGGGGAGAGCTGTGTGGTTTCCCAGACAGACTGCATCACCAGAGCCGAGCCCCGGCGGCAGCACCATTCATAATTTAAAGCCCGCTTGTCATTAAACGCTCTGGCTGCAGCAACACGAAACACTAAACAGGTGGTAATGGGGCTGGCGGGCTGACAGGGAgccctgcacacagacacagtaatgGGATACTGCCCACTAAGTGCACTTATTTctgccttttttaatttatttttttattgttttgcggaagtaatatataaatagtctTTTTAGAgggttaaataaatgcaattaatggATATGCAGCGATAGAGAAACCTGTTTGCTGTTGAGCAATCTACTCTCTCCCACCGGCTGCtattcccctccctccccccgtGCTTCCTCTCCGCTCTGCGGTGTCATGAAGCtggcagcctctctctctctcggcagCGTAGCCGGCCCTGACCGCTCGGCACACGTGGGGCCGCTTGTTTGCCGTGTTTGTCCCTTGCTGTCCTGCAGACCTGTGCGGTTGTCGTCAGAAAGTCGTGAAGCCTGATCTACCTTTCTTGTACAATGTAAGGGACATCTTATTAATAAtggcaatttaattaatttggggaggggggtataAATTGACTGCAATCAGGACAAGTTGTACTCTTTCTAAAGTGATCCCGGACCTCGCAATAGGGAGGTTAGCAGGTGTTAAacctgaatttaaaaaagaaaaggtgtcGAAAGTTTGGCAGTTGCACAGATGGCAGTTTTAACCAGGAACAAAGAGCTCCTTATGGCCGCCATTGAGGCCGGTTCTTCCTTGCGTCGCGTCAGAAGGGACTCAACTGGGTGACAACAGTGGCACCTCGGCTCAAGTCACAGCTCCCATTGGTGTTCGATGGCATTGGCTAAGACGTGTTTATGAGCAGGTAGAGCAGTACCCACTCAGAGAAGATGGAAGTTTCCACAATGTCCCAATTGTAAACGTATAAGTATTTTCCCTCACCTTGTCTGTGATGCTGGTATGTATTGTTGGAGTcgttcaaaatgtttttttggacTCTTACTTTGACAGGTAGACATTCGTGGAATACAGAGAGATGCTTCAGTGATGAAGGTTAATTGCTAAAATGGTGAAATTGTATTAATGGTTGTAGATGCTGCTCTGAGGTGTCACTGACTCCCTGATGGGGGGGCAGAGAGCCGTGCTCGCCTGCGGGAGACAGGGCTGTTGGTTTGCATGTTCATGAATTGCAGTCAGGGTTAAGGGATACAGGCTGGAGGAGCTTTGACTCTGTAAGATGCACATCACATCACAACTTCTTTCTGGCTTTTCCTCTGAGGAGGGGGTGACTGTTTTTACTGTTGTCTGCTGCCTCAAGTGGTTTCTCATCTCatgtacaataaacacattctTGCATCAGTGTGTCTTCATTGCTTCGTGTAGGAATCGCAGTGGTAAATAATGCTTTCATAATTACATTCTTGCCAGGGTTGTGTAGCTTTTCCCCACATGTTGTGTATAGTGgctcaatatttgttttttagatgaAGGTGATGGGAAgtggaaatattacatttttaaaaaacatacccACATAcccattgtttaaatgtgtgccaGATTATTTCTCCAAGATGCTTACTAACCAAGactaaaatagttttgtttttaataagtgAGCTCATTCAGAAATGTAGACTATGGTGGCTGAGAAGTCCAAAATGCAATagagtaaatatatttttcaaagagCAACTGTTTTGCAAGATCCACAAAAG

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005777 peroxisome cellular_component
GO:0008236 serine-type peptidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K01338 lon; ATP-dependent Lon protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 1034005 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1423503 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1690016 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 2056277 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 11243 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 147036 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 147107 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 147107 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 199610 16668897 ~ 16669511 (-) True G62580
AMCG00020316 mRNA downstream 354899 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020317 mRNA downstream 360026 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020313 mRNA downstream 378874 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020312 mRNA downstream 420849 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020309 mRNA downstream 523901 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020325 mRNA upstream 3297 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020324 mRNA upstream 4986 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020328 mRNA upstream 65409 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020329 mRNA upstream 89255 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020337 mRNA upstream 136329 16605616 ~ 16614656 (-) True AMCG00020337
TU78161 other downstream 182006 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 202460 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 337426 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 354840 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other downstream 354840 16098900 ~ 16102739 (-) True AMCG00020316
TU78391 other upstream 323579 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1141377 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1525257 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1536881 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1567755 18037042 ~ 18039960 (-) False G62961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_04950930_04976334.mRNA True 2995 mRNA 0.51 16 CI01000013 4950930 ~ 4976710 (+)