RNA id: AMCG00020325


Basic Information

Item Value
RNA id AMCG00020325
length 477
RNA type mRNA
GC content 0.66
exon number 3
gene id AMCG00020325
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16472584 ~ 16473662 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTCGGCCCGATTCCTGCCCGCCCTGGGTGCTGGAGACTGCCTGGACATCCGTGCGGCCCGCGTGCTGCTGGACAGTGACCACTACGCCATGGAGAAGCTGAAGAAGCGCGTGCTGGAGTATCTGGCGGTGCGGCAGCTCAAGAACAACCTGAAGGGCCCCATCCTGTGCTTCGTGGGGCCACCTGGCGTGGGCAAGACCAGCGTGGGCCGCTCCATCGCCAAGACACTGGGCCGTGAATTTCACCGCATCGCGCTGGGCGGCGTCTGCGACCAGTCCGACATCCGCGGACACAGGCGCACCTACGTGGGCAGCATGCCCGGCCGCATCCTCAATGGGCTGAAGAGCGTGGGCGTCAACAACCCTGTCTTCCTGCTGGACGAGGTGGACAAGCTGGGCAAGAGCCTGCAGGGTGACCCCGCAGCCGCCCTCCTGGAGGTCAGTGGGGGCAGGGGGTTCTGGGGCATTGGGTGA

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0016558 protein import into peroxisome matrix biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0009295 nucleoid cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 1049010 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1438508 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1705021 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 2071282 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 6868 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 142661 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 142732 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 142732 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 195235 16668897 ~ 16669511 (-) True G62580
AMCG00020323 mRNA downstream 3297 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020316 mRNA downstream 369904 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020317 mRNA downstream 375031 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020313 mRNA downstream 393879 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020312 mRNA downstream 435854 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020324 mRNA upstream 611 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020328 mRNA upstream 61034 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020329 mRNA upstream 84880 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020337 mRNA upstream 131954 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020336 mRNA upstream 143912 16617574 ~ 16624970 (-) True AMCG00020336
TU78161 other downstream 197011 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 217465 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 352431 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 369845 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 319204 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1137002 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1520882 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1532506 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1563380 18037042 ~ 18039960 (-) False G62961

Expression Profile