RNA id: AMCG00020328


Basic Information

Item Value
RNA id AMCG00020328
length 3654
RNA type mRNA
GC content 0.61
exon number 26
gene id AMCG00020328
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16534696 ~ 16548548 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCTGTACAACCTGACGTTACAGCGTGCCACTGGCATCTCGCACGCCATCCATGGGAATTTCTCTGGAACCAAGCAGCAGGAGATCGTTGTATCCCGGGGGAAGATCCTGGAGCTGCTGCGCCCCGATGCCAACACGGGGAAGGTGCACACGTTGCTGACGATGGAGGTGTTCGGCATCGTGCGCTCGCTCATGGCCTTCCGGCTCACAGGGGGCACCAAAGATTACATTGTGGTGGGCAGCGACTCGGGCCGCATCGTGATCCTGGAGTACCAGCCCTCCAAGAACCAGTTTGAGAAGGTGCACCAGGAGACGTTCGGCAAGAGTGGATGCCGACGCATCGTCCCTGGGCAGTTCCTTGCCGTCGACCCCAAGGGCCGTGCTGTCATGATTGGTGCGATTGAGAAGCAGAAGCTGGTGTACATCCTGAACAGAGATGCGGCGGCACGTCTGACCATCTCCTCTCCCCTGGAGGCACACAAGGCCAACACGCTGGTGTACCACGTGGTGGGCGTGGACGTGGGCTTTGAGAACCCCATGTTCGCCTGCCTGGAGATGGACTACGAGGAGGCGGACAACGACCCGACGGGGGAGGCTGCAGCTAACACCCAACAGACTCTGACGTTCTATGAGCTGGACCTGGGTCTGAACCACGTGGTGCGCAAATACAGCGAGGCCCTAGAGGAGCACGGCAACTTCCTCATCACTGTGCCTGGGGGCTCTGATGGGCCCAGCGGAGTCCTCATCTGCTCGGAGAATTACATCACCTACAAGAATTTTGGAGACCAGCCTGACATTCGGTGCCCCATCCCACGCAGGAGGAATGACCTGGATGACCCAGAGCGAGGGATGATCTTCGTCTGCTCAGCCACGCACAAGACCAAGTCCATGTTCTTCTTCTTAGCGCAGACAGAGCAGGGCGACATCTTCAAGGTCACGCTGGAGACGGACGAGGAGATGGTGACAGAGATCCGGTTGAAGTATTTTGATACCATCCCTGTGGCGACAGCCATGTGCGTTCTGAAGACCGGCTTCCTGTTCGTCGCCTCGGAATTCGGCAACCACTACCTGTACCAGATCGCTCACCTGGGCGACGATGACGAGGAGCCCGAGTTCTCGTCCGCGATGCCCCTGGAGGAAGGCGACACCTTCTTCTTCCAGCCGCGGCCGCTGAAGAACCTGGTTCTGGTGGACGAGCAGGAGAGCCTGTCGCCCATCATGTCCTGCCAGATTGCTGACCTGGCTAATGAGGACACGCCCCAGCTGTATGTGGCCTGTGGCCGGGGACCCAAGTCTACTCTCAGGGTGCTGAGACATGGGTTGGAGGTGTCAGAGATGGCTGTGTCTGAGCTGCCCGGTAACCCCAACGCTGTGTGGACTGTGCGGCGGCACATCGAAGacgAGTATGATGCGTACATCATCGTGTCCTTCGTGAACGCCACCCTGGTCCTGTCCATCGGGGAGACTGTGGAGGAAGTGACAGACTCCGGCTTCCTGGGCACCACGCCCACCCTGTCCTGCTCCCTGCTGGGCGAGGACGCGCTGGTGCAGgttTATCCTGACGGTATCCGGCACATCCGTGCAGACAAGCGTGTGAACGAGTGGAAGACCCCGGGCAAGAAGACAATCGTGCGCTGTGCCGTCAACCAGAGGCAGGTGGTCATCGCGCTGACGGGCGGAGAGCTGGTCTATTTCGAGATGGACCCGTCGGGCCAGCTAAACGAGTACACTGAGCGGAAGGAGATGTCGGCGGACGTGGTGTGCATGAGCCTGGCCAACGTGCCGCCCGGGGAGCAGCGCTCTCGCTTCCTGGCCGTGGGGTTGGTGGACAACACAGTCAGGATCATCTCCCTCGACCCCTCGGATTGTCTGCAGCCCCTCAGCATGCAGGCGCTGCCGGCCCAACCCGAGTCTCTGTGCATCGTGGAGATGGGCGGCGTGGAGAAGCAGGACGAGCTGGGGGAGAAGGGCTCCATCGGCTTCCTCTATCTCAACATCGGCCtgcagAACGGTGTGTTGCTGCGGACCGTGCTGGACCCGGTGACCGGAGACCTGTCTGACACGCGGACTCGCTACCTGGGGTCGCGGCCCGTCAAACTCTTCCGTGTCAGGATGCAGGGACAGGAAGCGGTGTTGGCCATGTCCAGCCGCTCCTGGCTCAGCTACTCCTATCAGTCACGCTTCCACCTGACGCCCCTGTCCTACGAGACGCTGGAGTATGCCTCGGGGTTCGCCTCCGAGCAGTGCCCTGAGGGCATCGTGGCGATCTCCACCAACACACTGCGgATCTTGGCCCTGGAGAAGCTGGGCGCGGTGTTTAACCAGGTGGCGTTCCCGCTGCAGTACACTCCCCGCCGCTTCGTCATCCACCCCGAGACCAGCAACCTGGTCCTGATCGAGACCGACCACAACGCATACACCGAGGCCACCAAGGCCCAACGCAAGCAGCAGATGGCAGAGGAGATGGTGGAGGCGGCTGGAGAGGATGAGAGGGAGCTGGCAGCAGAGATGGCTGCAGCCTTCCTGAACGAGAACCTGCCCGAGGCGATCTTCGGGGCACCCAAGGCCGGCTCAGGCCAGTGGGCCTCACTGGTGCGGCTCATCAACCCCATCCAGGGCAACACACTGGACTTGGTGCAGCTGGAGCAGAATGAGGCAGCctttagTGTGGCCGTGTGCCGGTTTACCAGTGGTGGTGATGACTGGTACGTGGTGGTGGGTGTGGCTAGGGATCTCATTCTGAACCCACGCTCGGTTGGCGGTGGCTTCATCTACACCTATCGGCTTGGAGGGGGCGGGGAAAAGCTGGAGTTCATGCACAAGACCCCAGTGGAGGATGTTCCTGTGGCCATAGCCCCGTTCCAGGGCCGGATTctggtgggggtggggaagcTCCTGCGCATCTATGACCTGGGCAAGAGGAAACTGCTGCGCAAGTGTGAGAACAAGCACGTCCCCAACCTCATTACAGGCATCCACACGATGGGGCAGCGCGTTGTGGTGTCGGACGTACAGGAGAGCCTGTTCTGGGTGCGCTACAAACGCAACGAGAACCAGCTCATCATCTTTGCAGATGACACGCACCCCCGCTGGGTCACCACTGCCTGCCTGCTGGACTACGACACCATGGCCTCTGCCGACAAGTTCGGCAACATCAGCATCGTGCGTCTGCCCCCCAACACCAGTGATGATGTGGATGAGGACCCCACGGGGAACAAGGCCCTCTGGGACAGGGGGCTGCTCAACGGTGCCTCCCAGAAGGCAGAGGTCATAATGAACTACCACATTGGGGAGACGGTGCTGTCGCTGCAGAAGACCACGCTGATCCCGGGGGGCTCCGAGTCACTGGTCTACACCACCCTGTCCGGGGGCATCGGCATCCTGGTCCCCTTCACCTCCCATGAGGACCACGATTTCTTCCAGCACTTGGAGATGCACATGCGTTCAGAGTTCCCCCCCTTGTGTGGGCGGGACCACCTTAGCTTCCGGTCCTACTACTTCCCTGTCAAGAACGTTATTGACGGGGACCTGTGTGAGCAGTTCAACTCCATGGACCCCAACAAGCAGAAGAGTGTATCGGCAGAGCTGGACAGGACACCCCCTGAGGTCTCCAAGAAACTGGAGGACATCCGTACACGCTATGCCTTCTAG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12830 SF3B3, SAP130, RSE1; splicing factor 3B subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78228 lncRNA downstream 53706 16480530 ~ 16480990 (-) True G62475
TU77990 lncRNA downstream 1111122 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1500620 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1767133 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 2133394 14345297 ~ 14401302 (-) False G62066
TU78317 lncRNA upstream 67775 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 67846 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 67846 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 120349 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 131308 16679856 ~ 16680624 (-) True G62582
AMCG00020324 mRNA downstream 55063 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020325 mRNA downstream 61034 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020323 mRNA downstream 65409 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020316 mRNA downstream 432016 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020317 mRNA downstream 437143 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020329 mRNA upstream 9994 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020337 mRNA upstream 57068 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020336 mRNA upstream 69026 16617574 ~ 16624970 (-) True AMCG00020336
AMCG00020333 mRNA upstream 76690 16625238 ~ 16631859 (-) True AMCG00020333
AMCG00020335 mRNA upstream 92456 16641004 ~ 16644491 (-) True AMCG00020335
TU78161 other downstream 259123 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 279577 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 414543 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 431957 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 244318 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1062116 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1445996 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1457620 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1488494 18037042 ~ 18039960 (-) False G62961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026399 False 4437 mRNA 0.48 27 NC_007129.7 18550418 ~ 18584839 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_04916607_04940299.mRNA True 4212 mRNA 0.49 28 CI01000013 4916313 ~ 4940308 (+)