RNA id: AMCG00020329


Basic Information

Item Value
RNA id AMCG00020329
length 3302
RNA type mRNA
GC content 0.66
exon number 23
gene id AMCG00020329
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16558542 ~ 16569600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGAAAGTGGTAGAAGTGCGTATTGCTGCTTCTCAGGCTGTCAGAGTGACTTGCCCTGAGGACAGGAGGGCTCGGCGTGCATGGGTTTACTGCTACCCTGAGTGTGTTAGAGTAcgaatgtgtgtgagagagagtacgtatcgctgtgtgtgtgtgtgagtccaGGATGCAGCGGCCAGCCGGGGTGCAGTGGACAGTGGTGGCCCTGACCTGCCAGCACCGGGACAGCGAGTATGCCTTCCAGCGCGAGCTGGAGTGCCGTCAGCGGCGGGGCCTGATCCCCCAAGGGGCTCTGCTGCTCACTGTGTCAGACCCGCAGGACCGGCTGGGCAGCGGGGGGGCCACTCTCAACGCCCTCCTGGTGGCGGCAGAGCACCTCAGCGCCCAGGCCGGGCACACGGTGGTGACGGCTGACGTGCTGGAGAACGCACACGTCCTCATCCTGCACATGGGGCGGGACTTCCCCTTCGATGGCTGCGGCCGAGGGTTCTGCTGGCTGCCGGCGGGGACGGCGGACctgggggaggtggaggggccCCTGTGCAGCCTGGACCTGCTGCTGTCCTGCCTCACACACCAGATTGCCCCTGGCTCCCCCCCTGGCGTGTGGGTGAGCGGTACAGACATGCTCCTGCACATCCGTACATCCCCCGACATTTCCTGGGATGGCTTCTCTGGGGTGAGAGTTTTCTCCCTGCCTGGTGACGTCAGTTATGCCAGGAACCATGGGGTCTACCTCACTGACAAGCAGGGCACAGTGCGTGACATCATCTACAAGGGCCCTGCCGACAAGATCCAGGCCTGTGCTTGGCCTGATGGGAGAGTCCCTCTGgtgtcaGGGCCGGTGTTTTTCTCAAGGGAAGTGGCAGAGCGTCTCTTGCACACCCACGTCACCCCACCCCTGGACGCCTGCACGTACCTGGGCCTGGACTCTGGGACGCCCGCAGTACAGctgTCTCTGTTCCTGGACATATTGCTGTGCCTGGCAGGAGATGTGTGTGAGGAGGACTTTGTGAGTGGCAACAGGCAGGGCAGCAGCTGCAGCCAGGGGCAGCAAGGGGCAGCGCTGAGGAACGCCCGCACCGtgctgtggagggagctgaggGGGATGGAGCTGACCCTGGCGTATGTTCCAGACGGTTGCTATGACTACATGACCCTGTCTGGGGACGAGCACATCGGCCGTTTGACGGAGAGAGCGCTGGGGGGCAGAGAGAcgctgtcacacactgagAACCCCCAGTTGCTAAGCGATGGCTGCTGTGTGATCAACAGCATTCTAGAAGGAAAGGTCAGCGTGGGGTCACAGGCTGTAGTGCAGCACTGCCACCTACAGGGCCCTCTGGTGATCCAATCAGGATGCCTCCTATCTGGGATTGACCTGACCTCATCAGCCCCCTCGCTGCAGCACGCCCCCCTCTCTGACATCATCATCCAGGGACACCACGTCCAGCTAGGGGACATGCGGCTCAGGGTGTTCACCGTCCTGGGACGCCATGACAACCTGGAGGCTTCTCCTGCCGACCGGAACGCCACATTCCTGAACCACGGCTGGGCGGAGTTCTCCAGGAGGACCGGGATACAGGCTGGAGAGCTGTGGGGTGAGGAGGGTGGCAGTGCTCCCCGCTCTCTCCTGGATGCCCGGTTGTTCCCAGTCTTCCAGCCCGGGGGGGCAGTGGGGCTGGGCGGGGTGCTGTGGCTGCTGGGGGCGGCTGGGGGTACCTGGGGGGGTGTGGAGCAGTGGAGGGCTGCCTGGCGCCTCTCTCTGCGGGATATCCTGTGCTATACTGACCAGCAGGGGGAGCTGGGCTGGCGCAGGGAGCTGTTCTTTGGCGGGGCGAGGAGGAGGGCGAAGGACACACTGCTGGGCCGGCGGGACCAGAGCCTCTTGCCGCTTGTCAGGGCTGCGGTACAGGGCGGCCAGCAGGGGGTGCTGCTGAGCACGCTGGATAGCGTGGCAGCTGACTGTGAGGACCCCGGTGTAGCTGCCCGCACTCTTGCCTGTGTAGCCGACGTGTTGGGCTGCATGGCTGGGGGGGAGGGTGGGCTGCGCGGGGGGCCAGCTGCCAACCCTGCCTGGAGCCCCGCCTTCGCCCTGCTGGAGAAGAAGGATCTCCCAGGGGGGGTCCGGGAACTCGCACTGCAGAGAAAGAACTGGCTCAGCAGGCCACACCTGCTGGTCCGGGCCGCCCGTCACTACGAGGGGGCGGGGCAGATCCTCATCCGTCAGGCTGTGATGTCAGCTCAACGCTTCATCACCCCTGGTCGAGGGGAGGCCCCGCCTGTTGGCGCATGGGTGGAGGTGGACTGTCCAGCCAGGATGGACCTGTCAGGTGGCTGGAGTGACACCCCGCCCATCACTTTCGAGCGGGGGGGTGCAGTGGTGAATGTGGCAGTGCGAGTGGACGGCCGGCGGCCCATTGGAGCCCGCGCCCGCCGTATCAGGGAGCCTCGCCTGCTATTGGTCAGCTCTAGCGGGGGGCGGGACTGCCAGTTCACCACAGAGACGGTGTGCGAGACGCTGGAGGACCTGCAGGACTACTACCAGCCACACGCTCCAGGTGCCCTGCTGAAAGCGGCCTGTATCTGCAGTGGCCTGGTGATCTGCccttcccagcagcccctggGGCAGCAGCTGATGGAGCGCTGTGGCGGGGGGCTGGAGGTCCACAGCTGGTCTGACCTGCCACACGGCTCAGGATTGGGGGGGGGCTGGCAGGACCAGGTGGGGgggctggtggggggggtgaagCTGGGCCGGTCGGCAGCAGCCCTGCCCCTCAGAGTGGAGGTGGAGCCCCTGGCCCTGCCCGACGGCTTCATTCACACCCTGAACCAGCACCTGCTGCTACTCTACACGGGCAAGACTCGGCTCGCTCGCAACCTCCTGCAGGACGTGGTGCGTAGCTGGTACTCCAGGCTGCCCTCCATGGTGGAGAACACTGAGGGGCTGGTGAGCAATGCACAGGACTGTGCCCAGGCCTGCAGAGAGGGCTCTCTGGAGCGGCTGGGTGCCTGTCTGGACCGGTACTGGCAGCAGAAGCGGGCGATGGCGCGGGGGTGTGAGCCGGCGGCCGTGCGCGCCATGATGGCAGCTCTGCGACCTCTGACGCTGGGGCAGACCCtggcgggggcggggggcggTGGATTCCTGTGCCTCCTCACCCGGGAGCCACGGCAGCAGGACAGGGTGCAGGCCGTGCTCTCCGCCACACAGgggCTGGGGGACTTCTCCGTCCACACTGTGGAAGTGGACACACAGGGGATCTCAGTCCGACACTCTAGCAGCAGCTCAGACTGA

Function

GO: NA

KEGG:

id description
K05305 FUK; fucokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78228 lncRNA downstream 77552 16480530 ~ 16480990 (-) True G62475
TU77990 lncRNA downstream 1134968 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1524466 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1790979 14703511 ~ 14767563 (-) True G62143
TU77716 lncRNA downstream 2157240 14353490 ~ 14401302 (-) True G62066
TU78317 lncRNA upstream 46723 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 46794 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 46794 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 99297 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 110256 16679856 ~ 16680624 (-) True G62582
AMCG00020328 mRNA downstream 9994 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020324 mRNA downstream 78909 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020325 mRNA downstream 84880 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020323 mRNA downstream 89255 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020316 mRNA downstream 455862 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020337 mRNA upstream 36016 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020336 mRNA upstream 47974 16617574 ~ 16624970 (-) True AMCG00020336
AMCG00020333 mRNA upstream 55638 16625238 ~ 16631859 (-) True AMCG00020333
AMCG00020335 mRNA upstream 71404 16641004 ~ 16644491 (-) True AMCG00020335
AMCG00020334 mRNA upstream 77662 16647262 ~ 16663094 (-) True AMCG00020334
TU78161 other downstream 282969 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 303423 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 438389 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 455803 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 223266 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1041064 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1424944 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1436568 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1467442 18037042 ~ 18039960 (-) False G62961

Expression Profile