RNA id: TU78274


Basic Information

Item Value
RNA id TU78274
length 1744
lncRNA type sense_over
GC content 0.57
exon number 2
gene id AMCG00020331
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16582886 ~ 16604658 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAGCCCCTGCTACGGGTTGGTGGTATGTGGGGGTCTCCGGTTTAAGGGGGCTGCCATAAACGTCGGAGACTGGGCAGGGACAGGGGCTGAGACGTAGACGAGGAGCGAGCGATCTGACTCCGCCAGGGGCCGAGGGGAGAGCGCAGATCCGGATCCgaagaggtggagagagagaggaagaaagacggggagggagggagggagggagagatcaGAGCATCTGGACGCGCAGCGCGGAGAGGACCGGAGCGCACATCCTCTCTCTGCTGAATTTTAATGAACGTGTGCCGGACTGTACCGTCTCTATCTTCTGCCACAACACCAGACTCGGGCGCTGGAGAAACATATCTATCCATCTACTAGTGTActgcatacatatttatCCCAGGCAGTGAGCTAGAGTTAAGCAGAACCAGAGCTACACCGGGAACCAACAGCGTACCCAAGACAGacgggcaggcaggcaggcagagagacagagaggtgtGTGTGCTAGGCCTGTCAGCTGCGGAGGGCAAGGGATCCTGTGACACTCATTACTCACAACGCAGGACAGAGGaaggaagaggggggggggggggggggggggtgcagcgcacacagacagcagaggAGGATCCTGTCACTTCCCCCCCAACAATCAGATTGGCAGACACTGTCCTGTGCGGTGCTGTGGAGAGAGTGGCAGCGGGGGAGCAGCCGTCTCTGTCAGGGCTCAGGGAGACGGAAGTGTGGGTGTCGCAGGGCTGGCATCAGAGCTGGGGCAGTGTGCGCCCAGGGCAGACAGCTGCGGGAGGCCAGGCGTGGGCACCGGGGCATGCAGGCACAGCCTCAGCCTCCTTGGTCCCACACTGAGTCCGTCTGGCCTGACTGCCCACCACGAGCTGCCATGACAGGGAGAGAGCACACACAGGAGTAGGATCTGAGCAAACGCACGGTCACGGACATGGAACCAGGGCATGACCAGCCTTGCACTTCGTCTAAGGACTGCCTCCCTGGGACCGCGAGACAGCCGCCCACTCATCCTCTGCCcggctgcactgtgctgtagctGCGAccgtttgccttttttatttcattattattaattcatttatttatttcttactgattttttttttctggaagaaAGATGACGACTGAAAAATAATCTCAACAGTTGTCAGACTTAGTGGTTcggaagggagggaggaggaggagcaggaggaggagggaggaagaAAGGGGCGGTGAGATGGAACCAGTAACTTTTGCACTCGAGCCCCTGAGCGGCAGAACTGTTTCCCACTTGTAGGTGGAGCGCTCTCCTGTTTGCTTGGGACTCGACCAAACAGGTTAGGCTGCATCAGTATGTGGAATACAGTGTTCAGACACCCTGTGTGAGAGTACAGAGGCCTGCAGCACACAGGAAGTTACTGTGCAGTTCAACAGACTCTCCACACTACAGGACTGGGACGCAACTGTGTCTGttcgtgtttttgtttgtcacaGGGAGAGAGAACTCTGATCACAGGGTGAAGAGCCAATAGGAGGGCTGCATGATTACAGTGCGATTGTAAGCAGCCaatcagtgtgcagtgtgcgcTGCAGAACTGTGTCATAGCCGTTTGGCTACAGTCTCCACGTTGTGGACAGAGGCTGTTGTGGCCGGGGGGCTGGCAGGAGCCGGCGAATGGGACTGTGGCGGCCACGGCCAGTCACTGAAGCAGCAACGTGAGAGgggagggtggtggtggtggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78259 lncRNA upstream 17697 16547736 ~ 16565189 (+) True G62504
TU78261 lncRNA upstream 33244 16547736 ~ 16549642 (+) False G62504
TU78248 lncRNA upstream 47485 16533356 ~ 16535401 (+) True G62494
TU78233 lncRNA upstream 78063 16501784 ~ 16504823 (+) True G62480
TU78174 lncRNA upstream 94704 16415478 ~ 16488182 (+) True G62432
TU78329 lncRNA downstream 47278 16644938 ~ 16646261 (+) True G62564
TU78390 lncRNA downstream 196004 16793664 ~ 16793880 (+) True G62617
TU78429 lncRNA downstream 389659 16987319 ~ 16989579 (+) True G62654
TU78471 lncRNA downstream 432533 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA downstream 434157 17031817 ~ 17035498 (+) True G62680
AMCG00020327 mRNA upstream 25429 16550086 ~ 16557457 (+) True AMCG00020327
AMCG00020326 mRNA upstream 130251 16450836 ~ 16452635 (+) True AMCG00020326
AMCG00020322 mRNA upstream 148829 16420323 ~ 16434057 (+) True AMCG00020322
AMCG00020321 mRNA upstream 282901 16293494 ~ 16299985 (+) True AMCG00020321
AMCG00020320 mRNA upstream 308312 16254493 ~ 16274574 (+) True AMCG00020320
AMCG00020338 mRNA downstream 18756 16616416 ~ 16617243 (+) True AMCG00020338
AMCG00020330 mRNA downstream 36442 16634102 ~ 16640976 (+) True AMCG00020330
AMCG00020332 mRNA downstream 68482 16666142 ~ 16680624 (+) True AMCG00020332
AMCG00020341 mRNA downstream 219923 16817583 ~ 16825446 (+) True AMCG00020341
AMCG00020349 mRNA downstream 229459 16827119 ~ 16828366 (+) True AMCG00020349
TU77751 other upstream 2113586 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2631839 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2716323 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2748054 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 3232174 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 216714 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 861500 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1330668 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1460898 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 1470127 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile