RNA id: AMCG00020332


Basic Information

Item Value
RNA id AMCG00020332
length 1367
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00020332
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16666142 ~ 16680624 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACTTCGTaaatcaatgtgtttgtgtgtaattcGTTGATTACAGGAGAGGCTAGGCTTGATACGGATTAGGAGGAAGCGTCGTTTCAGACTACCACCAATTCGTCTGGACCGCACACTGTACAGATGACTCCTTGAAGACACCAGAGCAGACCCACTGATCCAGATCACAGCAgAGGTGTCGGCATGGCTGGAGCCGGGGGACAGGACGTCTTCATCGCCCGCAAGTTTGTCTCGGAAACGGAGTTGGACGAGCAGCGCAAGAAGAGGCAAGAGGAATGGGAGAAGGTGCGGAAACCGGAGGACCCAGAAGAGTGTCCAGAGGAGGCGTACGACCCGCGCTCCCTGTTTGAGCGCCTGCAGGAGCAGAAGGACAAGAAGCAGCAGGAGTACGAAGAGCACGCTCTGACAAAACTGACAGCAAACACCGATAACAGGAAGGAGCCAGAGAAGAAGCCCACAGTGAAGCCAGCAGAGAGCAAGAGCGCCTTCTCACAGGCCAGGCTGCTGGCGGGAGCGGTGAAGCGCCGCAGCTCCGATTCATCCGACAGCTCGAAGAAGCAGCGGCTGGATGGGGAGGAGCTCAGCACCCAGCCAGACAGCGTGCGCTGTGGCGGGGGGGCCAGAGAGGTGGGCGGCAGGGCTGTGGTCCACCGGCCGTCGGCATCGGTGTGCGTGGGCATCCTACCCGGCCTGGGTGCCTACTCCGGCAGCAGCGACTCCGAGTCCAGCAGTGACAGCGAAGGTACCTTGTGCACGGCCGGGAACATTCTCTCCTCTGTGTTGCATTCCAGGCATCTCCCCACGACGCCCTGAGCCAGACCCCCATTGCCCGTGCTGCTGTCGCTGTATTGTAGCCGTTGCCATCACTGTCGTTGTTTTTGCCGTGAGCCATGCTGATACATTACATTACCCCCCCCCTCCTTTCAGCTCCCCCCGCTCTGTATCTCTAACAACCCATGTGTTACATTCCACGCAGTTTAACCTATGgcagcccccctcccccaacgTCAACGGAAGATTTTCGCAGTGCTTTTGCAGAGATAATGTGAAGGACAGTTAAGTACCTCGAGGACCCAACCAAGTGGACGGCACAAGGTCGTGTTAAAGCTCACGGAGATGTCTCTGCCTGTGGTGGGAAAAAagaggtgtttttgtttgtttgttttgggctGTTGTTCTTTCCCCTCCCACCCTTTCCTTTAAAacgttaaacaaaataattcaaactgGAACCACAACTCAGAGATAGTTggatatgtttttgtgttttgtatgtacaagcataacataaaataaaatgtgtgagCTCAGTGGTTGCAAAGTGAATGCCTGgtaaaatactgaataaatacatttttaagtta

Function

GO:

id name namespace
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78329 lncRNA upstream 19881 16644938 ~ 16646261 (+) True G62564
TU78274 lncRNA upstream 68482 16582886 ~ 16597660 (+) False AMCG00020331
TU78259 lncRNA upstream 100953 16547736 ~ 16565189 (+) True G62504
TU78261 lncRNA upstream 116500 16547736 ~ 16549642 (+) False G62504
TU78248 lncRNA upstream 130741 16533356 ~ 16535401 (+) True G62494
TU78390 lncRNA downstream 113040 16793664 ~ 16793880 (+) True G62617
TU78429 lncRNA downstream 306695 16987319 ~ 16989579 (+) True G62654
TU78471 lncRNA downstream 349569 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA downstream 351193 17031817 ~ 17035498 (+) True G62680
TU78590 lncRNA downstream 723761 17404385 ~ 17503263 (+) True G62781
AMCG00020330 mRNA upstream 25166 16634102 ~ 16640976 (+) True AMCG00020330
AMCG00020338 mRNA upstream 48899 16616416 ~ 16617243 (+) True AMCG00020338
AMCG00020331 mRNA upstream 61484 16597556 ~ 16604658 (+) True AMCG00020331
AMCG00020327 mRNA upstream 108685 16550086 ~ 16557457 (+) True AMCG00020327
AMCG00020326 mRNA upstream 213507 16450836 ~ 16452635 (+) True AMCG00020326
AMCG00020341 mRNA downstream 136959 16817583 ~ 16825446 (+) True AMCG00020341
AMCG00020349 mRNA downstream 146495 16827119 ~ 16828366 (+) True AMCG00020349
AMCG00020352 mRNA downstream 216393 16897017 ~ 16924481 (+) True AMCG00020352
AMCG00020351 mRNA downstream 285647 16966271 ~ 16979660 (+) True AMCG00020351
AMCG00020350 mRNA downstream 303963 16984587 ~ 16987141 (+) True AMCG00020350
TU77751 other upstream 2196842 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2715095 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2799579 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2831310 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 3315430 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 133750 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 778536 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1247704 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1377934 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 1387163 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile